About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Original Description/Redescription

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Partial Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution/Locality

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8025976.1METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE
CAI8025973.1METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE
CAI8025972.1METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE
CAI8025974.1METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE
CAI8025975.1METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE
CAI8025971.1METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE
CAI8025977.1DIHYDROOROTASE-RELATED
CAI8025978.13-OCTAPRENYL-4-HYDROXYBENZOATE CARBOXY-LYASE-RELATED
CAI8025979.13-OCTAPRENYL-4-HYDROXYBENZOATE CARBOXY-LYASE-RELATED
CAI8025980.1OXIDOREDUCTASE-RELATED
CAI8025981.1LUCIFERASE-LIKE MONOOXYGENASE
CAI8025982.1QUINOL MONOOXYGENASE YGIN-RELATED
CAI8025983.1UVRABC SYSTEM PROTEIN B
CAI8025984.1BINDING PROTEIN TRANSPEPTIDASE, PUTATIVE-RELATED
CAI8025985.1OS07G0260300 PROTEIN
CAI8025986.1GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE
CAI8025988.1GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE
CAI8025987.1GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE
CAI8025989.1GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE
CAI8025990.1GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE
CAI8025991.1DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC
CAI8025992.1
CAI8025993.1PROTEIN MEMO1
CAI8025994.1PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
CAI8025995.1PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
CAI8025996.1
CAI8025999.1GTP-BINDING PROTEIN HFLX
CAI8025998.1GTP-BINDING PROTEIN HFLX
CAI8025997.1GTP-BINDING PROTEIN HFLX
CAI8026000.1
CAI8026001.1TETRATRICOPEPTIDE REPEAT PROTEIN 6
CAI8026002.1ALCOHOL DEHYDROGENASE
CAI8026003.1PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE
CAI8026004.1
CAI8026005.1
CAI8026006.1FLAVIN PRENYLTRANSFERASE
CAI8026007.1
CAI8026008.1HISTIDINE BIOSYNTHESIS BIFUNCTIONAL PROTEIN
CAI8026009.1HISTIDINE BIOSYNTHESIS BIFUNCTIONAL PROTEIN
CAI8026010.1HISTIDINE BIOSYNTHESIS BIFUNCTIONAL PROTEIN
CAI8026011.1AMINOBENZOATE/ANTHRANILATE SYNTHASE
CAI8026012.1AMINOBENZOATE/ANTHRANILATE SYNTHASE
CAI8026013.1MULTIFUNCTIONAL TRYPTOPHAN BIOSYNTHESIS PROTEIN-RELATED
CAI8026014.1SLR6095 PROTEIN
CAI8026015.1
CAI8026016.1LUCIFERASE-LIKE MONOOXYGENASE
CAI8026017.1PYRUVATE KINASE
CAI8026018.1PYRUVATE KINASE
CAI8026019.1PYRUVATE KINASE
CAI8026020.1GLUTAMATE SYNTHASE [NADPH] SMALL CHAIN
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