About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Original Description/Redescription

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Partial Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution/Locality

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

<< First 574 575 576 577 578 579 580 581 582 583 Forward> Last>>        1226 pages in total

Gene IDDescription
CAI8026321.1EGF-LIKE-DOMAIN, MULTIPLE 7, 8
CAI8026322.1CYTOCHROME C OXIDASE POLYPEPTIDE
CAI8026323.1SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND N
CAI8026325.11-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE-RELATED
CAI8026324.11-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE-RELATED
CAI8026326.11-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE-RELATED
CAI8026327.11-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE-RELATED
CAI8026329.1ANKYRIN REPEAT FAMILY A
CAI8026328.1ANKYRIN REPEAT CONTAINING
CAI8026340.1POTE ANKYRIN DOMAIN
CAI8026345.1ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED
CAI8026339.1MOLTING PROTEIN MLT-4
CAI8026346.1SI:CH211-189E2.2
CAI8026347.1ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED
CAI8026341.1ANK_REP_REGION DOMAIN-CONTAINING PROTEIN
CAI8026334.1MOLTING PROTEIN MLT-4
CAI8026333.1ROLLING PEBBLES, ISOFORM B
CAI8026335.1ANKYRIN REPEAT FAMILY PROTEIN
CAI8026332.1ANKYRIN REPEAT FAMILY PROTEIN
CAI8026344.1ANKYRIN REPEAT CONTAINING
CAI8026343.1ANKYRIN REPEAT FAMILY PROTEIN
CAI8026338.1ANKYRIN REPEAT CONTAINING
CAI8026342.1ANKYRIN REPEAT FAMILY PROTEIN
CAI8026337.1ANK_REP_REGION DOMAIN-CONTAINING PROTEIN
CAI8026336.1ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN
CAI8026331.1ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN
CAI8026330.1ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED
CAI8026348.1ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
CAI8026349.1
CAI8026350.1
CAI8026352.1SRCR DOMAIN-CONTAINING PROTEIN
CAI8026351.1TYROSINE-PROTEIN KINASE RECEPTOR
CAI8026353.1SRCR DOMAIN-CONTAINING PROTEIN
CAI8026354.1TNF RECEPTOR ASSOCIATED FACTOR
CAI8026355.1AMMONIUM TRANSPORTER
CAI8026356.1AMMONIUM TRANSPORTER
CAI8026357.1AMMONIUM TRANSPORTER
CAI8026358.1AMMONIUM TRANSPORTER
CAI8026359.1
CAI8026362.14-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE
CAI8026361.14-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE
CAI8026360.14-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE
CAI8026363.1THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED
CAI8026364.1AMMONIUM TRANSPORTER
CAI8026365.1
CAI8026368.1RNA POLYMERASE SIGMA FACTOR RPO
CAI8026367.1RNA POLYMERASE SIGMA FACTOR RPO
CAI8026366.1RNA POLYMERASE SIGMA FACTOR RPO
CAI8026369.1H REPEAT-ASSOCIATED PREDICTED TRANSPOSASE
CAI8026370.1HYDROLASE, ALPHA/BETA FOLD FAMILY PROTEIN
TOP