About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Original Description/Redescription

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Partial Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution/Locality

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8026271.1DNA2/NAM7 HELICASE FAMILY
CAI8026272.1V-TYPE PROTON ATPASE SUBUNIT C
CAI8026273.1TRANSLATION INITIATION FACTOR EIF3-RELATED
CAI8026274.160S RIBOSOMAL PROTEIN L12
CAI8026275.160S RIBOSOMAL PROTEIN L12
CAI8026276.1ENDONUCLEASE III-LIKE PROTEIN 1
CAI8026277.1ENDONUCLEASE III-LIKE PROTEIN 1
CAI8026278.1ENDONUCLEASE III-LIKE PROTEIN 1
CAI8026279.1ENDONUCLEASE III-LIKE PROTEIN 1
CAI8026280.1GABA-B RECEPTOR
CAI8026281.1FOLYLPOLYGLUTAMATE SYNTHASE-RELATED
CAI8026282.1FOLYLPOLYGLUTAMATE SYNTHASE-RELATED
CAI8026283.1FAST LEU-RICH DOMAIN-CONTAINING
CAI8026284.1
CAI8026285.1
CAI8026286.1CENTROMERE PROTEIN E
CAI8026287.1CENTROMERE PROTEIN E
CAI8026288.1
CAI8026289.1
CAI8026292.1GLUTAMATE-RICH WD REPEAT-CONTAINING PROTEIN 1
CAI8026293.1GLUTAMATE-RICH WD REPEAT-CONTAINING PROTEIN 1
CAI8026290.1GLUTAMATE-RICH WD REPEAT-CONTAINING PROTEIN 1
CAI8026291.1GLUTAMATE-RICH WD REPEAT-CONTAINING PROTEIN 1
CAI8026294.1
CAI8026295.1
CAI8026296.1
CAI8026297.1
CAI8026298.1
CAI8026299.1
CAI8026304.1SRCR DOMAIN-CONTAINING PROTEIN
CAI8026303.1SRCR DOMAIN-CONTAINING PROTEIN
CAI8026302.1SODIUM/CALCIUM EXCHANGER
CAI8026301.1SRCR DOMAIN-CONTAINING PROTEIN
CAI8026300.1SRCR DOMAIN-CONTAINING PROTEIN
CAI8026305.1IGGFC_BINDING DOMAIN-CONTAINING PROTEIN
CAI8026307.1IGGFC_BINDING DOMAIN-CONTAINING PROTEIN
CAI8026306.1SRCR DOMAIN-CONTAINING PROTEIN
CAI8026308.1IGGFC_BINDING DOMAIN-CONTAINING PROTEIN
CAI8026309.1
CAI8026312.1HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED
CAI8026311.1HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED
CAI8026310.1
CAI8026313.1
CAI8026316.1
CAI8026315.1
CAI8026314.1
CAI8026317.1
CAI8026318.1
CAI8026319.1
CAI8026320.1CYTOKINE RECEPTOR
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