About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Original Description/Redescription

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Partial Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution/Locality

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8026721.1TRIFUNCTIONAL ENZYME SUBUNIT ALPHA
CAI8026722.1TRIFUNCTIONAL ENZYME SUBUNIT ALPHA
CAI8026724.1
CAI8026723.1
CAI8026726.1
CAI8026725.1
CAI8026727.1
CAI8026728.1
CAI8026729.1
CAI8026730.1
CAI8026731.1
CAI8026732.1
CAI8026733.1
CAI8026734.1
CAI8026735.1
CAI8026736.1WINGS APART-LIKE PROTEIN HOMOLOG
CAI8026737.1WINGS APART-LIKE PROTEIN HOMOLOG
CAI8026738.1WINGS APART-LIKE PROTEIN HOMOLOG
CAI8026739.1
CAI8026740.1
CAI8026741.1
CAI8026742.1RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
CAI8026743.1RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
CAI8026744.1
CAI8026745.1MEVALONATE KINASE/GALACTOKINASE
CAI8026747.1MEVALONATE KINASE/GALACTOKINASE
CAI8026746.1MEVALONATE KINASE/GALACTOKINASE
CAI8026748.1MEVALONATE KINASE/GALACTOKINASE
CAI8026749.1MEVALONATE KINASE/GALACTOKINASE
CAI8026751.1MEVALONATE KINASE/GALACTOKINASE
CAI8026750.1MEVALONATE KINASE/GALACTOKINASE
CAI8026752.1REGULATOR OF RPOS
CAI8026753.1TWO-COMPONENT HISTIDINE KINASE
CAI8026754.1GLUCOSE INHIBITED DIVISION PROTEIN A
CAI8026757.1NUCLEOID-ASSOCIATED PROTEIN YBAB
CAI8026756.1NUCLEOID-ASSOCIATED PROTEIN YBAB
CAI8026755.1NUCLEOID-ASSOCIATED PROTEIN YBAB
CAI8026758.1REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT
CAI8026759.1CYTOSINE DEAMINASE FAMILY MEMBER
CAI8026760.1PROGRESSIVE ANKYLOSIS PROTEIN HOMOLOG
CAI8026765.1PROGRESSIVE ANKYLOSIS PROTEIN HOMOLOG
CAI8026764.1PROGRESSIVE ANKYLOSIS PROTEIN HOMOLOG
CAI8026761.1PROGRESSIVE ANKYLOSIS PROTEIN HOMOLOG
CAI8026762.1
CAI8026763.1PROGRESSIVE ANKYLOSIS PROTEIN HOMOLOG
CAI8026766.1
CAI8026767.1IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H
CAI8026768.1N-ACYLNEURAMINATE-9-PHOSPHATASE
CAI8026769.1HISTIDINE BIOSYNTHESIS BIFUNCTIONAL PROTEIN
CAI8026771.1HISTIDINE BIOSYNTHESIS BIFUNCTIONAL PROTEIN
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