About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Original description

(Bowerbank et al., 1858  Cárdenas et al., 2013)

Partial Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution/locality

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8026872.1SH3 MULTIPLE DOMAIN
CAI8026871.1SH3 MULTIPLE DOMAIN
CAI8026870.1SH3 MULTIPLE DOMAIN
CAI8026874.1SH3 MULTIPLE DOMAIN
CAI8026875.1SH3 MULTIPLE DOMAIN
CAI8026876.1
CAI8026878.1TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN
CAI8026877.1TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN
CAI8026879.1TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN
CAI8026881.1
CAI8026882.1
CAI8026880.1
CAI8026883.139S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL
CAI8026884.1
CAI8026888.1GLYOXALASE DOMAIN-CONTAINING PROTEIN 4
CAI8026886.1GLYOXALASE DOMAIN-CONTAINING PROTEIN 4
CAI8026887.1GLYOXALASE DOMAIN-CONTAINING PROTEIN 4
CAI8026885.1
CAI8026889.1PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B
CAI8026890.1PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B
CAI8026891.1
CAI8026892.1PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B
CAI8026893.1
CAI8026895.1FORMIN
CAI8026894.1FORMIN
CAI8026896.1SPHINGOMYELIN PHOSPHODIESTERASE 4
CAI8026897.1SPHINGOMYELIN PHOSPHODIESTERASE 4
CAI8026899.1SPHINGOMYELIN PHOSPHODIESTERASE 4
CAI8026898.1SPHINGOMYELIN PHOSPHODIESTERASE 4
CAI8026901.1SPHINGOMYELIN PHOSPHODIESTERASE 4
CAI8026900.1
CAI8026903.1SPHINGOMYELIN PHOSPHODIESTERASE 4
CAI8026902.1SPHINGOMYELIN PHOSPHODIESTERASE 4
CAI8026904.1SPHINGOMYELIN PHOSPHODIESTERASE 4
CAI8026906.1SPHINGOMYELIN PHOSPHODIESTERASE 4
CAI8026905.1SPHINGOMYELIN PHOSPHODIESTERASE 4
CAI8026907.1SPHINGOMYELIN PHOSPHODIESTERASE 4
CAI8026909.1SPHINGOMYELIN PHOSPHODIESTERASE 4
CAI8026908.1SPHINGOMYELIN PHOSPHODIESTERASE 4
CAI8026910.1LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR
CAI8026911.1
CAI8026912.1
CAI8026913.1
CAI8026914.1DNAJ HOMOLOG SUBFAMILY C MEMBER 22
CAI8026918.1MAJOR FACILITATOR SUPERFAMILY TRANSPORTER 16, ISOFORM B
CAI8026917.1MAJOR FACILITATOR SUPERFAMILY TRANSPORTER 16, ISOFORM B
CAI8026916.1MAJOR FACILITATOR SUPERFAMILY TRANSPORTER 16, ISOFORM B
CAI8026915.1MAJOR FACILITATOR SUPERFAMILY TRANSPORTER 16, ISOFORM B
CAI8026919.1
CAI8026920.1
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