About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Key Reference Paper

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8009173.1TYPE II SECRETION SYSTEM PROTEIN GSPE-RELATED
CAI8009171.1TYPE II SECRETION SYSTEM PROTEIN GSPE-RELATED
CAI8009172.1TYPE II SECRETION SYSTEM PROTEIN GSPE-RELATED
CAI8009174.1IRON-SULFUR CLUSTER ASSEMBLY 2 HOMOLOG, MITOCHONDRIAL
CAI8009175.1IRON-SULFUR CLUSTER ASSEMBLY 2 HOMOLOG, MITOCHONDRIAL
CAI8009176.1IRON-SULFUR CLUSTER ASSEMBLY 2 HOMOLOG, MITOCHONDRIAL
CAI8009177.1RESPIRATORY NITRATE REDUCTASE
CAI8009178.1CYSTEINE DESULFURYLASE FAMILY MEMBER
CAI8009179.1CYSTEINE DESULFURYLASE FAMILY MEMBER
CAI8009180.1PHOSPHOMETHYLPYRIMIDINE KINASE
CAI8009181.1NICOTINATE-NUCLEOTIDE ADENYLYLTRANSFERASE-RELATED
CAI8009182.1OBG GTPASE FAMILY
CAI8009183.1SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE
CAI8009185.12-HYDROXYACYL-COA LYASE
CAI8009184.12-HYDROXYACYL-COA LYASE
CAI8009186.1PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE
CAI8009187.1PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE
CAI8009188.1PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE
CAI8009189.1PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE
CAI8009190.1PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE
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