Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)
Geodia barretti Bowerbank, 1858
(Bowerbank et al., 1858 Cárdenas et al., 2013)
the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters
Geodia barretti has been found at depths from 30 to 2000 m.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness (%) | Scaffold/Contig N50 (kb) | GC content (%) | Repeat Rate (%) | Gene Number |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50 | 48.4 | 49.3 | 19.05 | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8026971.1 | |
| CAI8026972.1 | U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B |
| CAI8026973.1 | U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B |
| CAI8026974.1 | BECLIN 1 |
| CAI8026976.1 | E3 UBIQUITIN-PROTEIN LIGASE RING1 / RING 2 FAMILY MEMBER |
| CAI8026975.1 | E3 UBIQUITIN-PROTEIN LIGASE RING1 / RING 2 FAMILY MEMBER |
| CAI8026977.1 | E3 UBIQUITIN-PROTEIN LIGASE RING1 / RING 2 FAMILY MEMBER |
| CAI8026978.1 | E3 UBIQUITIN-PROTEIN LIGASE RING1 / RING 2 FAMILY MEMBER |
| CAI8026979.1 | UNCHARACTERIZED |
| CAI8026980.1 | UNCHARACTERIZED |
| CAI8026981.1 | |
| CAI8026982.1 | |
| CAI8026984.1 | RHO GTPASE-ACTIVATING PROTEIN 190 |
| CAI8026983.1 | RHO GTPASE-ACTIVATING PROTEIN 190 |
| CAI8026985.1 | TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL |
| CAI8026986.1 | TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL |
| CAI8026987.1 | INOSITOL MONOPHOSPHATASE |
| CAI8026988.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8026989.1 | INNER MEMBRANE PROTEIN YGIH |
| CAI8026990.1 | RECA |
| CAI8026991.1 | RECA |
| CAI8026992.1 | RECA |
| CAI8026993.1 | RECA |
| CAI8026994.1 | REGULATORY PROTEIN RECX FAMILY PROTEIN |
| CAI8026995.1 | INNER MEMBRANE PROTEIN YGIH |
| CAI8026996.1 | 2',3'-CYCLIC-NUCLEOTIDE 2'-PHOSPHODIESTERASE |
| CAI8026999.1 | RIBONUCLEASE Y |
| CAI8026997.1 | RIBONUCLEASE Y |
| CAI8026998.1 | RIBONUCLEASE Y |
| CAI8027000.1 | DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED |
| CAI8027001.1 | ELECTRON TRANSFER FLAVOPROTEIN BETA SUBUNIT LYSINE METHYLTRANSFERASE |
| CAI8027002.1 | |
| CAI8027003.1 | |
| CAI8027004.1 | INOSITOL-3-PHOSPHATE SYNTHASE |
| CAI8027005.1 | INOSITOL-3-PHOSPHATE SYNTHASE |
| CAI8027006.1 | |
| CAI8027007.1 | SULFOQUINOVOSYL TRANSFERASE SQD2 |
| CAI8027008.1 | 6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE DMRL SYNTHASE LUMAZINE SYNTHASE |
| CAI8027009.1 | 6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE DMRL SYNTHASE LUMAZINE SYNTHASE |
| CAI8027010.1 | 6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE DMRL SYNTHASE LUMAZINE SYNTHASE |
| CAI8027011.1 | 6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE DMRL SYNTHASE LUMAZINE SYNTHASE |
| CAI8027012.1 | 6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE DMRL SYNTHASE LUMAZINE SYNTHASE |
| CAI8027013.1 | MOXR FAMILY PROTEIN |
| CAI8027014.1 | TRYPTOPHAN RNA-BINDING ATTENUATOR PROTEIN-LIKE PROTEIN |
| CAI8027015.1 | 4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL KINASE, CHLOROPLASTIC |
| CAI8027016.1 | - |
| CAI8027017.1 | HISTIDINOL-PHOSPHATE AMINOTRANSFERASE-RELATED |
| CAI8027018.1 | COBALAMIN BIOSYNTHESIS PROTEIN CBIB |
| CAI8027019.1 | ADENOSYLCOBINAMIDE-GDP RIBAZOLETRANSFERASE |
| CAI8027020.1 | NICOTINATE-NUCLEOTIDE--DIMETHYLBENZIMIDAZOLE PHOSPHORIBOSYLTRANSFERASE |
