Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_002833-T1 | ATILLA, ISOFORM B-RELATED-RELATED |
LLU|FUN_002834-T1 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_002835-T1 | |
LLU|FUN_002836-T1 | |
LLU|FUN_002837-T1 | |
LLU|FUN_002838-T1 | SCAVENGER RECEPTOR CLASS F |
LLU|FUN_002839-T1 | |
LLU|FUN_002840-T1 | |
LLU|FUN_002841-T1 | |
LLU|FUN_002842-T1 | |
LLU|FUN_002843-T1 | RAB GTPASE-ACTIVATING PROTEIN 1-LIKE |
LLU|FUN_002844-T1 | |
LLU|FUN_002845-T1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
LLU|FUN_002846-T1 | N-ACETYLGALACTOSAMINYLTRANSFERASE |
LLU|FUN_002847-T1 | |
LLU|FUN_002848-T1 | |
LLU|FUN_002849-T1 | |
LLU|FUN_002850-T1 | |
LLU|FUN_002851-T1 | |
LLU|FUN_002852-T1 | |
LLU|FUN_002853-T1 | NETRIN/LAMININ-RELATED |
LLU|FUN_002854-T1 | PROTEIN C9ORF135 |
LLU|FUN_002855-T1 | PROTEASOME SUBUNIT ALPHA/BETA |
LLU|FUN_002856-T1 | MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER |
LLU|FUN_002857-T1 | TRANSMEMBRANE PROTEIN 151 HOMOLOG |
LLU|FUN_002858-T1 | PID DOMAIN-CONTAINING PROTEIN |
LLU|FUN_002859-T1 | CALRETICULIN AND CALNEXIN |
LLU|FUN_002860-T1 | |
LLU|FUN_002861-T1 | UNCHARACTERIZED |
LLU|FUN_002862-T1 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED |
LLU|FUN_002863-T1 | SULFATASE MODIFYING FACTOR 1, 2 |
LLU|FUN_002864-T1 | TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE |
LLU|FUN_002865-T1 | PROTEIN EVA-1 |
LLU|FUN_002866-T1 | PROTEIN CBG16200 |
LLU|FUN_002867-T1 | AFADIN- AND ALPHA-ACTININ-BINDING PROTEIN |
LLU|FUN_002868-T1 | AFADIN- AND ALPHA-ACTININ-BINDING PROTEIN |
LLU|FUN_002869-T1 | PROTEIN O-LINKED-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE 1/ALPHA-1,3-MANNOSYL-GLYCOPROTEIN 2-BETA-N-ACETYLGLUCOSAMINYLTRANSFERASE |
LLU|FUN_002870-T1 | - |
LLU|FUN_002871-T1 | |
LLU|FUN_002872-T1 | |
LLU|FUN_002873-T1 | |
LLU|FUN_002874-T1 | |
LLU|FUN_002875-T1 | |
LLU|FUN_002876-T1 | LD44762P |
LLU|FUN_002877-T1 | 40S RIBOSOMAL PROTEIN S27 |
LLU|FUN_002878-T1 | HEAT SHOCK PROTEIN HSP-12.2-RELATED |
LLU|FUN_002879-T1 | IFT140/172-RELATED |
LLU|FUN_002880-T1 | VESICULAR MANNOSE-BINDING LECTIN |
LLU|FUN_002881-T1 | ECTOPIC P GRANULES PROTEIN 5 HOMOLOG |
LLU|FUN_002882-T1 | ECTOPIC P GRANULES PROTEIN 5 HOMOLOG |