About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_002833-T1ATILLA, ISOFORM B-RELATED-RELATED
LLU|FUN_002834-T1ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
LLU|FUN_002835-T1
LLU|FUN_002836-T1
LLU|FUN_002837-T1
LLU|FUN_002838-T1SCAVENGER RECEPTOR CLASS F
LLU|FUN_002839-T1
LLU|FUN_002840-T1
LLU|FUN_002841-T1
LLU|FUN_002842-T1
LLU|FUN_002843-T1RAB GTPASE-ACTIVATING PROTEIN 1-LIKE
LLU|FUN_002844-T1
LLU|FUN_002845-T1E3 UBIQUITIN-PROTEIN LIGASE MIB2
LLU|FUN_002846-T1N-ACETYLGALACTOSAMINYLTRANSFERASE
LLU|FUN_002847-T1
LLU|FUN_002848-T1
LLU|FUN_002849-T1
LLU|FUN_002850-T1
LLU|FUN_002851-T1
LLU|FUN_002852-T1
LLU|FUN_002853-T1NETRIN/LAMININ-RELATED
LLU|FUN_002854-T1PROTEIN C9ORF135
LLU|FUN_002855-T1PROTEASOME SUBUNIT ALPHA/BETA
LLU|FUN_002856-T1MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER
LLU|FUN_002857-T1TRANSMEMBRANE PROTEIN 151 HOMOLOG
LLU|FUN_002858-T1PID DOMAIN-CONTAINING PROTEIN
LLU|FUN_002859-T1CALRETICULIN AND CALNEXIN
LLU|FUN_002860-T1
LLU|FUN_002861-T1UNCHARACTERIZED
LLU|FUN_002862-T1LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED
LLU|FUN_002863-T1SULFATASE MODIFYING FACTOR 1, 2
LLU|FUN_002864-T1TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE
LLU|FUN_002865-T1PROTEIN EVA-1
LLU|FUN_002866-T1PROTEIN CBG16200
LLU|FUN_002867-T1AFADIN- AND ALPHA-ACTININ-BINDING PROTEIN
LLU|FUN_002868-T1AFADIN- AND ALPHA-ACTININ-BINDING PROTEIN
LLU|FUN_002869-T1PROTEIN O-LINKED-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE 1/ALPHA-1,3-MANNOSYL-GLYCOPROTEIN 2-BETA-N-ACETYLGLUCOSAMINYLTRANSFERASE
LLU|FUN_002870-T1-
LLU|FUN_002871-T1
LLU|FUN_002872-T1
LLU|FUN_002873-T1
LLU|FUN_002874-T1
LLU|FUN_002875-T1
LLU|FUN_002876-T1LD44762P
LLU|FUN_002877-T140S RIBOSOMAL PROTEIN S27
LLU|FUN_002878-T1HEAT SHOCK PROTEIN HSP-12.2-RELATED
LLU|FUN_002879-T1IFT140/172-RELATED
LLU|FUN_002880-T1VESICULAR MANNOSE-BINDING LECTIN
LLU|FUN_002881-T1ECTOPIC P GRANULES PROTEIN 5 HOMOLOG
LLU|FUN_002882-T1ECTOPIC P GRANULES PROTEIN 5 HOMOLOG
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