Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_002783-T1 | |
LLU|FUN_002784-T1 | |
LLU|FUN_002785-T1 | |
LLU|FUN_002786-T1 | |
LLU|FUN_002787-T1 | GEO13361P1-RELATED |
LLU|FUN_002788-T1 | TRANSMEMBRANE 9 SUPERFAMILY PROTEIN |
LLU|FUN_002789-T1 | FRIZZLED |
LLU|FUN_002790-T1 | |
LLU|FUN_002791-T1 | CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE |
LLU|FUN_002792-T1 | |
LLU|FUN_002793-T1 | |
LLU|FUN_002794-T1 | |
LLU|FUN_002795-T1 | MATRIX PROTEIN, PUTATIVE-RELATED |
LLU|FUN_002796-T1 | MATRIX PROTEIN, PUTATIVE-RELATED |
LLU|FUN_002797-T1 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
LLU|FUN_002798-T1 | ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN |
LLU|FUN_002799-T1 | 41-2 PROTEIN ANTIGEN-RELATED |
LLU|FUN_002800-T1 | CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED |
LLU|FUN_002801-T1 | GLUTATHIONE PEROXIDASE |
LLU|FUN_002802-T1 | HUNTINGTIN-INTERACTING PROTEIN K FAMILY MEMBER |
LLU|FUN_002803-T1 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_002804-T1 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_002805-T1 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_002806-T1 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
LLU|FUN_002807-T1 | |
LLU|FUN_002808-T1 | |
LLU|FUN_002809-T1 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
LLU|FUN_002810-T1 | |
LLU|FUN_002811-T1 | |
LLU|FUN_002812-T1 | |
LLU|FUN_002813-T1 | |
LLU|FUN_002814-T1 | PATCHED-RELATED |
LLU|FUN_002815-T1 | FUKUTIN RELATED PROTEIN |
LLU|FUN_002816-T1 | COLLAGEN ALPHA |
LLU|FUN_002817-T1 | |
LLU|FUN_002818-T1 | COLLAGEN ALPHA |
LLU|FUN_002819-T1 | |
LLU|FUN_002820-T1 | |
LLU|FUN_002821-T1 | LEUCINE ZIPPER-EF-HAND CONTAINING TRANSMEMBRANE PROTEIN |
LLU|FUN_002822-T1 | |
LLU|FUN_002823-T1 | DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 7-RELATED |
LLU|FUN_002824-T1 | CEH-10 HOMEODOMAIN-CONTAINING HOMOLOG |
LLU|FUN_002825-T1 | |
LLU|FUN_002826-T1 | IGGFC_BINDING DOMAIN-CONTAINING PROTEIN |
LLU|FUN_002827-T1 | IGGFC_BINDING DOMAIN-CONTAINING PROTEIN |
LLU|FUN_002828-T1 | |
LLU|FUN_002829-T1 | ARPIN |
LLU|FUN_002830-T1 | V-TYPE ATP SYNTHASE SUBUNIT D |
LLU|FUN_002831-T1 | SORTING NEXIN FAMILY MEMBER |
LLU|FUN_002832-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 175 |