Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_023810-T1 | |
LLU|FUN_023811-T1 | MIXED LINEAGE PROTEIN KINASE |
LLU|FUN_023812-T1 | MIXED LINEAGE PROTEIN KINASE |
LLU|FUN_023813-T1 | |
LLU|FUN_023814-T1 | PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B |
LLU|FUN_023815-T1 | PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B |
LLU|FUN_023816-T1 | |
LLU|FUN_023817-T1 | |
LLU|FUN_023818-T1 | ENHANCER OF MRNA-DECAPPING PROTEIN 4 |
LLU|FUN_023819-T1 | DNA REPAIR-SCAFFOLDING PROTEIN SPIDR |
LLU|FUN_023820-T1 | CCAAT/ENHANCER BINDING PROTEIN |
LLU|FUN_023821-T1 | CCAAT/ENHANCER BINDING PROTEIN |
LLU|FUN_023822-T1 | LEUKOCYTE RECEPTOR CLUSTER LRC MEMBER 1 |
LLU|FUN_023823-T1 | PHOSPHOGLYCOLATE PHOSPHATASE |
LLU|FUN_023824-T1 | |
LLU|FUN_023825-T1 | |
LLU|FUN_023826-T1 | PROTEIN ARGININE N-METHYLTRANSFERASE |
LLU|FUN_023827-T1 | CYTOCHROME C1 |
LLU|FUN_023828-T1 | EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN |
LLU|FUN_023829-T1 | PALMITOYLTRANSFERASE ZDHHC16 |
LLU|FUN_023830-T1 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
LLU|FUN_023831-T1 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
LLU|FUN_023832-T1 | |
LLU|FUN_023833-T1 | G-PROTEIN COUPLED RECEPTOR 158-RELATED |
LLU|FUN_023834-T1 | |
LLU|FUN_023835-T1 | |
LLU|FUN_023836-T1 | PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED |
LLU|FUN_023837-T1 | PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B |
LLU|FUN_023838-T1 | PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B |
LLU|FUN_023839-T1 | CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE |
LLU|FUN_023840-T1 | CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE |
LLU|FUN_023841-T1 | |
LLU|FUN_023842-T1 | ARGINYL-TRNA SYNTHETASE |
LLU|FUN_023843-T1 | UNCHARACTERIZED |
LLU|FUN_023844-T1 | |
LLU|FUN_023845-T1 | |
LLU|FUN_023846-T1 | |
LLU|FUN_023847-T1 | |
LLU|FUN_023848-T1 | CELL DIVISION PROTEIN KINASE |
LLU|FUN_023849-T1 | |
LLU|FUN_023850-T1 | |
LLU|FUN_023851-T1 | ATAXIA TELANGIECTASIA MUTATED ATM -RELATED |
LLU|FUN_023852-T1 | |
LLU|FUN_023853-T1 | |
LLU|FUN_023854-T1 | LEUCOKININ RECEPTOR-RELATED |
LLU|FUN_023855-T1 | |
LLU|FUN_023856-T1 | |
LLU|FUN_023857-T1 | TRANSMEMBRANE PROTEIN 180 |
LLU|FUN_023858-T1 | |
LLU|FUN_023859-T1 | LIPASE |