Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_023701-T1 | SPRY DOMAIN CONTAINING SOCS BOX PROTEIN |
LLU|FUN_023702-T1 | RIBOSOMAL PROTEIN L27 |
LLU|FUN_023703-T1 | SPERMATOGENESIS-ASSOCIATED PROTEIN 20 |
LLU|FUN_023704-T1 | SPERMATOGENESIS-ASSOCIATED PROTEIN 20 |
LLU|FUN_023705-T1 | SPERMATOGENESIS-ASSOCIATED PROTEIN 20 |
LLU|FUN_023706-T1 | CYTOCHROME C OXIDASE SUBUNIT 6C |
LLU|FUN_023707-T1 | |
LLU|FUN_023708-T1 | VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM |
LLU|FUN_023709-T1 | |
LLU|FUN_023710-T1 | |
LLU|FUN_023711-T1 | |
LLU|FUN_023712-T1 | VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM |
LLU|FUN_023713-T1 | 26S PROTESOME SUBUNIT 6 |
LLU|FUN_023714-T1 | IFT140/172-RELATED |
LLU|FUN_023715-T1 | IFT140/172-RELATED |
LLU|FUN_023716-T1 | |
LLU|FUN_023717-T1 | |
LLU|FUN_023718-T1 | |
LLU|FUN_023719-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
LLU|FUN_023720-T1 | NOVEL ZZ TYPE ZINC FINGER DOMAIN CONTAINING PROTEIN |
LLU|FUN_023721-T1 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
LLU|FUN_023722-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
LLU|FUN_023723-T1 | NOVEL ZZ TYPE ZINC FINGER DOMAIN CONTAINING PROTEIN |
LLU|FUN_023724-T1 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
LLU|FUN_023725-T1 | NOVEL ZZ TYPE ZINC FINGER DOMAIN CONTAINING PROTEIN |
LLU|FUN_023726-T1 | |
LLU|FUN_023727-T1 | |
LLU|FUN_023728-T1 | ATP SYNTHASE F CHAIN, MITOCHONDRIAL-RELATED |
LLU|FUN_023729-T1 | AMINO ACID TRANSPORTER |
LLU|FUN_023730-T1 | CENTROSOMAL PROTEIN OF 55 KDA |
LLU|FUN_023731-T1 | |
LLU|FUN_023732-T1 | |
LLU|FUN_023733-T1 | |
LLU|FUN_023734-T1 | |
LLU|FUN_023735-T1 | UNNAMED PRODUCT |
LLU|FUN_023736-T1 | |
LLU|FUN_023737-T1 | |
LLU|FUN_023738-T1 | |
LLU|FUN_023739-T1 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
LLU|FUN_023740-T1 | |
LLU|FUN_023741-T1 | |
LLU|FUN_023742-T1 | GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 1 |
LLU|FUN_023743-T1 | |
LLU|FUN_023744-T1 | HISTIDINE-RICH GLYCOPROTEIN |
LLU|FUN_023745-T1 | |
LLU|FUN_023746-T1 | FMRFAMIDE RECEPTOR-RELATED |
LLU|FUN_023747-T1 | GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 1 |
LLU|FUN_023748-T1 | NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER |
LLU|FUN_023749-T1 | AGAP005574-PA |
LLU|FUN_023750-T1 |