About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_52025-0.11SUA5
Bpl_scaf_52025-0.14GLYOXALASE FAMILY PROTEIN
Bpl_scaf_52025-0.172-METHYLCITRATE DEHYDRATASE-RELATED
Bpl_scaf_52025-0.26SUA5
Bpl_scaf_52025-0.82-METHYLCITRATE DEHYDRATASE-RELATED
Bpl_scaf_52030-0.0
Bpl_scaf_52030-0.4LEUCOKININ RECEPTOR-RELATED
Bpl_scaf_52042-0.11INTRAFLAGELLAR TRANSPORT PROTEIN 43 HOMOLOG
Bpl_scaf_52042-0.13
Bpl_scaf_52042-0.6PUTATIVE-RELATED
Bpl_scaf_52053-0.0UNCHARACTERIZED
Bpl_scaf_52053-0.11CXC DOMAIN-CONTAINING PROTEIN-RELATED
Bpl_scaf_52053-0.15
Bpl_scaf_52061-0.11
Bpl_scaf_52061-0.27
Bpl_scaf_52061-0.29
Bpl_scaf_52061-0.30
Bpl_scaf_52061-0.31
Bpl_scaf_52083-0.0BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
Bpl_scaf_52083-0.5
Bpl_scaf_52090-0.23
Bpl_scaf_52090-0.24APONTIC
Bpl_scaf_52090-0.8
Bpl_scaf_52090-0.9
Bpl_scaf_52096-0.1
Bpl_scaf_52096-0.2
Bpl_scaf_52096-0.9
Bpl_scaf_52097-0.0
Bpl_scaf_52097-1.11
Bpl_scaf_52097-1.12
Bpl_scaf_52097-2.11ENHANCER OF POLYCOMB
Bpl_scaf_52097-2.14HOMEOBOX PROTEIN TRANSCRIPTION FACTORS
Bpl_scaf_52097-2.15
Bpl_scaf_52097-2.16
Bpl_scaf_52097-3.0
Bpl_scaf_52097-5.3ZINC FINGER PROTEIN
Bpl_scaf_52097-6.0
Bpl_scaf_52097-6.4METALLOPROTEASE M41 FTSH
Bpl_scaf_52097-6.5NUCLEAR FACTOR ERYTHROID 2-RELATED FACTOR
Bpl_scaf_52100-0.0CADHERIN-23
Bpl_scaf_52100-0.14EGF-LIKE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_52100-0.15
Bpl_scaf_52109-0.10
Bpl_scaf_52109-0.11
Bpl_scaf_52109-0.2
Bpl_scaf_52110-0.0BONE MARROW PROTEOGLYCAN
Bpl_scaf_52110-0.13SI:CH211-266K2.1
Bpl_scaf_52110-0.33MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Bpl_scaf_52110-0.34COLLAGEN ALPHA
Bpl_scaf_52110-0.79COLLAGEN ALPHA
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