Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_51465-1.13 | LUPUS LA PROTEIN-RELATED |
| Bpl_scaf_51465-1.14 | MATRIX PROTEIN, PUTATIVE-RELATED |
| Bpl_scaf_51466-0.0 | |
| Bpl_scaf_51469-0.0 | PROTEIN LIN-28 |
| Bpl_scaf_51474-1.3 | D-DOPACHROME DECARBOXYLASE |
| Bpl_scaf_51474-1.6 | |
| Bpl_scaf_51478-0.0 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_5148-0.11 | GTPASE, IMAP FAMILY MEMBER-RELATED |
| Bpl_scaf_5148-0.9 | BEN DOMAIN-CONTAINING PROTEIN 3 |
| Bpl_scaf_51481-0.4 | OLIGORIBONUCLEASE, MITOCHONDRIAL |
| Bpl_scaf_51481-1.0 | YBAK DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_51481-1.13 | |
| Bpl_scaf_51481-1.14 | HOMEOBOX PROTEIN ARISTALESS |
| Bpl_scaf_51481-1.27 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_51490-0.2 | |
| Bpl_scaf_51490-1.15 | |
| Bpl_scaf_51490-1.16 | |
| Bpl_scaf_51490-1.17 | SIDESTEP PROTEIN |
| Bpl_scaf_51490-2.14 | NEPHRIN |
| Bpl_scaf_51490-2.15 | SIDESTEP PROTEIN |
| Bpl_scaf_51491-0.10 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Bpl_scaf_51491-0.11 | |
| Bpl_scaf_51491-0.12 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Bpl_scaf_51491-1.2 | CARBONIC ANHYDRASE |
| Bpl_scaf_51491-1.3 | CARBONIC ANHYDRASE |
| Bpl_scaf_51491-2.6 | LD33804P |
| Bpl_scaf_51491-3.17 | FLAVIN MONOAMINE OXIDASE |
| Bpl_scaf_51491-3.18 | CIRCADIAN LOCOMOTER OUTPUT CYCLES PROTEIN KAPUT |
| Bpl_scaf_51491-3.9 | URICASE AND TRANSTHYRETIN-RELATED |
| Bpl_scaf_51491-4.4 | UNCHARACTERIZED |
| Bpl_scaf_51491-4.5 | LRP2-BINDING PROTEIN |
| Bpl_scaf_51491-7.0 | CALCIUM BINDING PROTEINS |
| Bpl_scaf_51491-8.3 | CALCIUM BINDING PROTEINS |
| Bpl_scaf_51491-9.12 | UNCHARACTERIZED |
| Bpl_scaf_51491-9.18 | BLOC-1-RELATED COMPLEX SUBUNIT 7 BORSC7 |
| Bpl_scaf_51491-9.3 | XK-RELATED PROTEIN |
| Bpl_scaf_51491-9.6 | - |
| Bpl_scaf_51491-9.7 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_51501-0.2 | |
| Bpl_scaf_51501-0.5 | RNA-BINDING PROTEIN 33 |
| Bpl_scaf_51501-1.1 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_51501-1.8 | KELCH REPEAT AND BTB DOMAIN-CONTAINING PROTEIN 13-RELATED |
| Bpl_scaf_51501-1.9 | KELCH PROTEIN |
| Bpl_scaf_51501-2.10 | WD REPEAT DOMAIN 60 |
| Bpl_scaf_51501-2.15 | |
| Bpl_scaf_51501-2.19 | WD REPEAT DOMAIN 60 |
| Bpl_scaf_51501-2.20 | |
| Bpl_scaf_51501-2.9 | EXTENDED SYNAPTOTAGMIN-LIKE PROTEIN 2, ISOFORM C |
| Bpl_scaf_51502-0.0 | |
| Bpl_scaf_51504-0.0 |
