Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_51345-0.32 | |
| Bpl_scaf_51345-0.37 | THROMBOSPONDIN |
| Bpl_scaf_51345-0.38 | |
| Bpl_scaf_51345-0.8 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
| Bpl_scaf_51350-0.18 | COLLAGEN ALPHA |
| Bpl_scaf_51350-0.19 | |
| Bpl_scaf_51364-0.8 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_51378-0.10 | SEC24-RELATED PROTEIN |
| Bpl_scaf_51378-0.14 | TYROSINE-PROTEIN KINASE RECEPTOR |
| Bpl_scaf_51378-0.22 | |
| Bpl_scaf_51378-0.26 | CEREBELLIN-RELATED |
| Bpl_scaf_51378-0.27 | VACUOLAR ATP SYNTHASE SUBUNIT F |
| Bpl_scaf_51378-0.8 | PROTEIN C7ORF21 |
| Bpl_scaf_5138-0.5 | INTEGRIN ALPHA |
| Bpl_scaf_51395-0.14 | HEPARAN SULFATE SULFOTRANSFERASE |
| Bpl_scaf_51395-0.15 | HEPARAN SULFATE SULFOTRANSFERASE |
| Bpl_scaf_51404-0.1 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_51404-0.13 | |
| Bpl_scaf_51404-0.16 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_51404-0.2 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_51404-0.3 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_51404-0.4 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_51404-0.9 | |
| Bpl_scaf_51418-0.5 | APPLE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_51427-1.14 | DNA2/NAM7 HELICASE FAMILY |
| Bpl_scaf_51427-1.15 | POLY A POLYMERASE CID PAP -RELATED |
| Bpl_scaf_51427-1.30 | FOCADHESIN FAMILY MEMBER |
| Bpl_scaf_51427-1.32 | FOCADHESIN FAMILY MEMBER |
| Bpl_scaf_51427-1.33 | AGAP001705-PA |
| Bpl_scaf_51432-0.0 | |
| Bpl_scaf_51432-0.10 | TITIN |
| Bpl_scaf_51432-0.11 | CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 8 |
| Bpl_scaf_51432-1.0 | |
| Bpl_scaf_51448-0.13 | EARLY ENDOSOME ANTIGEN 1 |
| Bpl_scaf_51448-0.7 | N-ACYL-PHOSPHATIDYLETHANOLAMINE-HYDROLYZING PHOSPHOLIPASE D |
| Bpl_scaf_51448-0.8 | POLYGLUTAMINE BINDING PROTEIN 1/MARVEL MEMBRANE-ASSOCIATING DOMAIN CONTAINING 3 |
| Bpl_scaf_51448-0.9 | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 |
| Bpl_scaf_51448-1.16 | NINJURIN-RELATED |
| Bpl_scaf_51448-1.31 | REVERSE TRANSCRIPTASES |
| Bpl_scaf_51448-1.32 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| Bpl_scaf_51448-1.34 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| Bpl_scaf_51448-1.35 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| Bpl_scaf_51451-0.0 | |
| Bpl_scaf_51451-0.2 | |
| Bpl_scaf_51454-0.0 | |
| Bpl_scaf_51454-0.12 | ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED |
| Bpl_scaf_51459-0.2 | SMALL INTEGRAL MEMBRANE PROTEIN 20 |
| Bpl_scaf_51463-0.1 | |
| Bpl_scaf_51465-0.3 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_51465-1.12 | MATRIX PROTEIN, PUTATIVE-RELATED |
