Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_50917-0.6 | GRIP AND COILED-COIL DOMAIN-CONTAINING PROTEIN 1 |
| Bpl_scaf_50917-1.18 | |
| Bpl_scaf_50917-1.22 | VITELLOGENIN-RELATED |
| Bpl_scaf_50918-0.6 | PRO-INTERLEUKIN-16 |
| Bpl_scaf_50918-0.9 | IRON-SULFUR CLUSTER CO-CHAPERONE PROTEIN HSCB |
| Bpl_scaf_50918-1.5 | IL16-RELATED |
| Bpl_scaf_50918-2.10 | PENICILLIN-BINDING PROTEIN |
| Bpl_scaf_50918-2.11 | DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT |
| Bpl_scaf_50918-2.23 | DIADENOSINE 5,5-P1,P4-TETRAPHOSPHATE PYROPHOSPHOHYDROLASE MUTT |
| Bpl_scaf_50918-2.25 | KINESIN-RELATED PROTEIN 6 |
| Bpl_scaf_50919-0.7 | SACSIN |
| Bpl_scaf_50919-0.8 | SACSIN |
| Bpl_scaf_50919-10.3 | |
| Bpl_scaf_50919-11.0 | FMRFAMIDE-RELATED PEPTIDES |
| Bpl_scaf_50919-11.2 | TRANSPOSON |
| Bpl_scaf_50919-12.7 | OXYSTEROL-BINDING PROTEIN-RELATED |
| Bpl_scaf_50919-14.9 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED |
| Bpl_scaf_50919-15.13 | RHO-GTPASE-ACTIVATING PROTEIN LRG1 |
| Bpl_scaf_50919-15.19 | |
| Bpl_scaf_50919-15.2 | |
| Bpl_scaf_50919-15.3 | |
| Bpl_scaf_50919-15.5 | |
| Bpl_scaf_50919-17.1 | |
| Bpl_scaf_50919-17.10 | |
| Bpl_scaf_50919-17.16 | SLR0304 PROTEIN |
| Bpl_scaf_50919-17.7 | |
| Bpl_scaf_50919-18.10 | |
| Bpl_scaf_50919-18.14 | |
| Bpl_scaf_50919-18.6 | VESICLE PROTEIN SORTING-ASSOCIATED |
| Bpl_scaf_50919-18.9 | |
| Bpl_scaf_50919-19.1 | RING FINGER PROTEIN 127 |
| Bpl_scaf_50919-19.2 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_50919-19.5 | MULTIPLE PDZ DOMAIN PROTEIN |
| Bpl_scaf_50919-20.3 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_50919-20.8 | FIBRINOGEN ALPHA CHAIN |
| Bpl_scaf_50919-21.12 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_50919-21.2 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_50919-21.5 | IMPORTIN-7, 8, 11 |
| Bpl_scaf_50919-4.7 | |
| Bpl_scaf_50919-5.0 | |
| Bpl_scaf_50919-6.0 | |
| Bpl_scaf_50919-6.13 | |
| Bpl_scaf_50919-6.16 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Bpl_scaf_50919-6.8 | |
| Bpl_scaf_50919-7.8 | NUCLEAR HORMONE RECEPTOR |
| Bpl_scaf_50919-8.17 | NUCLEAR HORMONE RECEPTOR |
| Bpl_scaf_50919-8.18 | NUCLEAR HORMONE RECEPTOR |
| Bpl_scaf_50919-9.14 | CELL CYCLE CONTROL PROTEIN 50 |
| Bpl_scaf_50919-9.3 | CELL CYCLE CONTROL PROTEIN 50 |
| Bpl_scaf_50919-9.7 | NUCLEAR HORMONE RECEPTOR HR3-RELATED |
