About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_51882-5.17-
Bpl_scaf_51882-5.22IG-LIKE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_51892-0.1
Bpl_scaf_51892-0.8
Bpl_scaf_51892-0.9LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED
Bpl_scaf_5190-0.0
Bpl_scaf_51901-0.0
Bpl_scaf_51902-0.2BONUS, ISOFORM C-RELATED
Bpl_scaf_51902-1.9NUCLEAR RECEPTOR COACTIVATOR 5-RELATED
Bpl_scaf_51902-2.1HYPOXIA-INDUCIBLE FACTOR 1 ALPHA
Bpl_scaf_51902-3.11ALPHA KINASE/ELONGATION FACTOR 2 KINASE
Bpl_scaf_51902-3.12
Bpl_scaf_51902-3.24
Bpl_scaf_51902-3.25IDURONATE 2-SULFATASE
Bpl_scaf_51902-3.9ALPHA KINASE/ELONGATION FACTOR 2 KINASE
Bpl_scaf_51902-4.5
Bpl_scaf_51902-5.11UNCHARACTERIZED
Bpl_scaf_51902-5.15
Bpl_scaf_51902-5.16TRANSMEMBRANE PROTEIN
Bpl_scaf_51910-0.8LACTOYLGLUTATHIONE LYASE GLYOXALASE I
Bpl_scaf_51918-0.7
Bpl_scaf_51918-0.9
Bpl_scaf_51927-0.0
Bpl_scaf_51927-0.5
Bpl_scaf_51927-0.6
Bpl_scaf_51932-0.2INTERFERON ALPHA-INDUCIBLE PROTEIN 27
Bpl_scaf_51945-0.7MASK PROTEIN
Bpl_scaf_51959-0.3
Bpl_scaf_51979-0.10
Bpl_scaf_51979-0.11
Bpl_scaf_51980-0.0CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
Bpl_scaf_51980-0.16NEPHRIN
Bpl_scaf_51980-0.17NECTIN-RELATED
Bpl_scaf_51980-1.9NECTIN-RELATED
Bpl_scaf_51980-3.0
Bpl_scaf_51980-3.5
Bpl_scaf_51980-3.9ATILLA, ISOFORM B-RELATED-RELATED
Bpl_scaf_51980-4.0
Bpl_scaf_51980-4.6ACETYL-COA C-ACYLTRANSFERASE
Bpl_scaf_51980-5.7
Bpl_scaf_51985-0.4TETRASPANIN
Bpl_scaf_51992-0.0COILED-COIL DOMAIN-CONTAINING PROTEIN 180
Bpl_scaf_51992-0.6PROTEIN STAR
Bpl_scaf_52000-0.4RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Bpl_scaf_52000-0.5
Bpl_scaf_52001-0.10
Bpl_scaf_52001-0.3
Bpl_scaf_52001-0.7
Bpl_scaf_52001-0.9
Bpl_scaf_52001-1.16
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