Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_52110-1.13 | COLLAGEN ALPHA |
| Bpl_scaf_52110-1.39 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_52110-1.41 | BETA-CAROTENE DIOXYGENASE |
| Bpl_scaf_52110-2.3 | ADENYLATE CYCLASE TYPE 1 |
| Bpl_scaf_52110-3.1 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_52110-4.43 | ATP-BINDING CASSETTE SUB-FAMILY C |
| Bpl_scaf_52110-4.45 | PHOSPHATIDATE CYTIDYLYLTRANSFERASE |
| Bpl_scaf_52110-5.12 | ER LUMEN PROTEIN RETAINING RECEPTOR |
| Bpl_scaf_52110-5.5 | CALCIUM UNIPORTER PROTEIN, MITOCHONDRIAL |
| Bpl_scaf_52110-6.11 | PHOSPHATASE WITH HOMOLOGY TO TENSIN |
| Bpl_scaf_52110-6.19 | |
| Bpl_scaf_52110-6.4 | |
| Bpl_scaf_52116-0.10 | |
| Bpl_scaf_52116-0.14 | |
| Bpl_scaf_52116-0.19 | |
| Bpl_scaf_52116-0.24 | |
| Bpl_scaf_52116-0.25 | |
| Bpl_scaf_52116-0.26 | |
| Bpl_scaf_52116-0.27 | |
| Bpl_scaf_52133-0.5 | NUCLEAR PORE COMPLEX PROTEIN NUP133 |
| Bpl_scaf_52133-0.6 | NUCLEAR PORE COMPLEX PROTEIN NUP133 |
| Bpl_scaf_52143-0.11 | BOMB/KIRA PROTEINS |
| Bpl_scaf_52143-0.13 | |
| Bpl_scaf_52162-0.10 | |
| Bpl_scaf_52162-0.15 | O-METHYLTRANSFERASE-RELATED |
| Bpl_scaf_52162-0.16 | O-METHYLTRANSFERASE-RELATED |
| Bpl_scaf_52188-0.3 | ACROSIN-RELATED |
| Bpl_scaf_52188-1.0 | CUBILIN |
| Bpl_scaf_52188-1.14 | ACROSIN-RELATED |
| Bpl_scaf_52188-1.15 | APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR. |
| Bpl_scaf_52189-0.3 | DYNACTIN 6 |
| Bpl_scaf_52189-1.0 | |
| Bpl_scaf_52189-1.10 | ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD |
| Bpl_scaf_52189-1.5 | |
| Bpl_scaf_52189-2.10 | |
| Bpl_scaf_52189-2.3 | METALLOPROTEASE TLDD |
| Bpl_scaf_52189-2.4 | |
| Bpl_scaf_52189-3.4 | AMINOTRANSFERASE CLASS V |
| Bpl_scaf_52189-3.5 | RE38146P |
| Bpl_scaf_52189-3.6 | PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE/GLYCOSYLTRANSFERASE 25 FAMILY MEMBER |
| Bpl_scaf_52189-4.12 | ATP SYNTHASE GAMMA CHAIN |
| Bpl_scaf_52189-4.13 | SPRY DOMAIN CONTAINING SOCS BOX PROTEIN |
| Bpl_scaf_52189-5.4 | THIAMIN PYROPHOSPHOKINASE |
| Bpl_scaf_52189-6.3 | MYOSUPPRESSIN RECEPTOR 1, ISOFORM B-RELATED |
| Bpl_scaf_52189-6.5 | DUF614 FAMILY PROTEIN-RELATED |
| Bpl_scaf_52189-7.12 | OTU DOMAIN CONTAINING PROTEIN |
| Bpl_scaf_52189-7.14 | CALCIUM BINDING PROTEIN |
| Bpl_scaf_52189-7.19 | |
| Bpl_scaf_52189-7.21 | |
| Bpl_scaf_52189-7.23 | TRANSMEMBRANE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 4 TMCO4 |
