About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS21201ARMADILLO-TYPE FOLD-RELATED
HS21202WD40 REPEAT PROTEINPRL1/PRL2-RELATED
HS21203FIBRINOGEN ALPHA CHAIN
HS21204LECITHIN RETINOL ACYLTRANSFERASE
HS21205LECITHIN RETINOL ACYLTRANSFERASE
HS21206NEUROPEPTIDE Y RECEPTOR
HS21207PDZ AND LIM DOMAIN PROTEIN ZASP
HS21208SH3 DOMAIN-CONTAINING
HS21209
HS21210TOLL-LIKE RECEPTOR
HS21211CYTOCHROME P450 FAMILY 4
HS21212B2 BRADYKININ RECEPTOR/ANGIOTENSIN II RECEPTOR
HS21213CADHERIN-23
HS21214ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
HS21215FRG1 PROTEIN
HS21216ACID AMIDASE
HS21217PERICENTRIOLAR MATERIAL 1-RELATED
HS21218SQUAMOUS CELL CARCINOMA ANTIGEN RECOGNISED BY CYTOTOXIC T LYMPHOCYTES
HS21219OXYSTEROL-BINDING PROTEIN-RELATED
HS21220CASPASE
HS21221WINGED HELIX DOMAIN-CONTAINING PROTEIN
HS21222OVOCHYMASE-RELATED
HS21223PROTEASE M14 CARBOXYPEPTIDASE
HS21224KELCH PROTEIN
HS21225MEDIATOR COMPLEX SUBUNIT 28
HS21226LEUCINE AMINOPEPTIDASE-RELATED
HS21227CLARIN
HS21228UNCHARACTERIZED
HS21229PROMININ PROM PROTEIN
HS21230FGF BINDING PROTEIN-RELATED
HS21231FGF BINDING PROTEIN-RELATED
HS21232ANNEXIN
HS21233UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
HS21234LIM DOMAIN ONLY 7
HS21235TRANSMEMBRANE PROTEIN 192
HS21236
HS21237LD02310P
HS21238UNCHARACTERIZED
HS21239TRANSMEMBRANE PROTEIN 154
HS21240PHOSPHOLIPASE A-2-ACTIVATING PROTEIN
HS21241DCTP PYROPHOSPHATASE 1
HS21242GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED
HS21243RAI16 PROTEIN-RELATED
HS21244SH3 DOMAIN-CONTAINING
HS2124540S RIBOSOMAL PROTEIN S3A
HS21246BEIGE/BEACH-RELATED
HS21247CELL FATE DETERMINING PROTEIN MAB21-RELATED
HS21248SERINE/THREONINE-PROTEIN KINASE
HS21249KNIRPS-RELATED PROTEIN-RELATED
HS21250OLIGOPHRENIN 1
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