About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS20901-
HS20902
HS20903
HS20904TRANSLATION FACTOR
HS20905SI:CH211-232M10.4-RELATED
HS20906TRANSCRIPTION INITIATION FACTOR IA RRN3
HS20907MULTIPLE PDZ DOMAIN PROTEIN
HS20908ARMADILLO SEGMENT POLARITY PROTEIN
HS20909UNCHARACTERIZED
HS20910KERATIN ASSOCIATED PROTEIN 3-3-RELATED
HS20911
HS20912SEPTIN
HS20913REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS20914ATAXIA TELANGIECTASIA MUTATED ATM -RELATED
HS20915S -2-HYDROXY-ACID OXIDASE-RELATED
HS20916YALI0A06105P
HS20917LDOC1 RELATED
HS20918COPPER AMINE OXIDASE
HS20919
HS20920PROTEASOME REGULATOR PA28
HS20921COLLAGEN ALPHA
HS20922
HS20923OVARIAN CARCINOMA ANTIGEN CA125-RELATED
HS20924
HS20925UNCHARACTERIZED
HS20926UNCHARACTERIZED
HS20927CYTOSOLIC PHOSPHOLIPASE A2
HS20928ENDONUCLEASE-RELATED
HS20929REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS20930ARGININE AND GLUTAMATE-RICH PROTEIN 1
HS20931EPHRIN
HS20932SODIUM/CALCIUM EXCHANGER
HS20933LUNG SEVEN TRANSMEMBRANE RECEPTOR
HS20934REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS20935UNCHARACTERIZED
HS20936SH3 MULTIPLE DOMAIN
HS20937G-PROTEIN COUPLED RECEPTOR
HS20938
HS20939A-KINASE ANCHOR PROTEIN AKAP 8
HS20940BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
HS20941BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
HS20942ANTIGEN BSP, PUTATIVE-RELATED
HS20943DNAJ HOMOLOG SUBFAMILY A MEMBER 3, MITOCHONDRIAL
HS20944
HS20945CALCIUM-INDEPENDENT PHOSPHOLIPASE A2
HS20946POLYCOMB GROUP PROTEIN PC
HS20947DYNEIN HEAVY CHAIN FAMILY PROTEIN
HS20948DYNEIN HEAVY CHAIN FAMILY PROTEIN
HS20949DYNEIN LIGHT CHAIN
HS20950PENTRAXIN
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