About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS20601HISTONE H4
HS20602UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE
HS20603HISTONE H2B
HS20604ADENYLOSUCCINATE LYASE
HS20605GTPASE, IMAP FAMILY MEMBER-RELATED
HS20606ACTIVATING TRANSCRIPTION FACTOR ATF 4/5
HS20607APOLIPOPROTEIN L
HS20608
HS20609MITOCHONDRIAL DYNAMICS PROTEINS 49/51 FAMILY MEMBER
HS20610THIOSULFATE SULFERTANSFERASE
HS20611THIOSULFATE SULFERTANSFERASE
HS20612UBIQUITIN-CONJUGATING ENZYME E2
HS20613CYTOKINE RECEPTOR
HS20614CEREBELLIN-RELATED
HS20615CARBOHYDRATE SULFOTRANSFERASE
HS20616CASPASE RECRUITMENT DOMAIN FAMILY
HS20617AP-5 COMPLEX SUBUNIT ZETA-1
HS20618ADIPOR/PROGESTIN RECEPTOR-RELATED
HS20619WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED
HS20620
HS20621HECT DOMAIN UBIQUITIN-PROTEIN LIGASE
HS20622UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED
HS20623FASCIN
HS20624ATP SYNTHASE F CHAIN, MITOCHONDRIAL-RELATED
HS20625PHD FINGER TRANSCRIPTION FACTOR
HS20626EQUILIBRATIVE NUCLEOSIDE TRANSPORTER
HS20627CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 4-RELATED
HS20628
HS20629SERINE HYDROXYMETHYLTRANSFERASE
HS2063028 KDA HEAT- AND ACID-STABLE PHOSPHOPROTEIN PDGF-ASSOCIATED PROTEIN
HS20631PROTEIN BUD31-RELATED
HS20632SMITH-MAGENIS SYNDROME REGION GENE 8 PROTEIN
HS20633PROKARYOTIC DNA TOPOISOMERASE
HS20634ZINC ION-BINDING PROTEIN
HS20635CHROMOBOX PROTEIN HOMOLOG 7
HS20636CBP/P300-RELATED
HS20637CBP/P300-RELATED
HS20638XAA-PRO AMINOPEPTIDASE 3
HS20639HSC70-INTERACTING PROTEIN
HS20640RING BOX
HS20641SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
HS20642RAN GTPASE-ACTIVATING PROTEIN 1
HS20643MICRO-RNA BINDING ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 7
HS20644THYROTROPH EMBRYONIC FACTOR RELATED
HS20645TRANSDUCER OF ERBB2 TOB
HS20646ACONITATE HYDRATASE B
HS20647GUANYLYL CYCLASE
HS20648DNA-DIRECTED RNA POLYMERASE II, III
HS20649CALCIUM-REGULATED HEAT STABLE PROTEIN CRHSP-24-RELATED
HS20650PHOSPHOMANNOMUTASE
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