About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS20351MYELOID-ASSOCIATED DIFFERENTIATION MARKER MYADM FAMILY MEMBER
HS20352NOTUM-RELATED
HS20353CENTROMERE PROTEIN X
HS20354
HS20355TRANSMEMBRANE CHANNEL-RELATED
HS20356SYNAPTOGYRIN
HS20357APYRASE
HS20358HL07962P-RELATED
HS20359
HS20360HL07962P-RELATED
HS20361METALLOPROTEASE INHIBITOR
HS20362UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
HS20363REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS20364GUANYL-NUCLEOTIDE EXCHANGE FACTOR
HS20365
HS20366PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY SUBUNIT
HS20367
HS20368TRANSMEMBRANE PROTEIN 114/235 FAMILY MEMBER
HS20369FASCIN
HS20370PHD FINGER TRANSCRIPTION FACTOR
HS20371PHD FINGER TRANSCRIPTION FACTOR
HS20372PROTEIN FAM104A
HS20373PROTEIN HID1
HS20374PROTON CHANNEL OTOP
HS20375AMNIONLESS
HS20376B-BOX DOMAIN CONTAINING
HS20377UNCHARACTERIZED
HS20378ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
HS20379PROTON CHANNEL OTOP
HS20380NEUROTRANSMITTER GATED ION CHANNEL
HS20381INWARD RECTIFIER POTASSIUM CHANNEL
HS20382INWARD RECTIFIER POTASSIUM CHANNEL
HS20383DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED
HS20384HL07962P-RELATED
HS20385G PROTEIN COUPLED RECEPTOR, CLASS C, GROUP 5
HS20386G PROTEIN COUPLED RECEPTOR, CLASS C, GROUP 5
HS20387UNCHARACTERIZED
HS20388TETRASPANIN
HS20389HEME-BINDING PROTEIN 1
HS20390SERINE/THREONINE-PROTEIN KINASE LMTK1
HS20391BRAIN-SPECIFIC ANGIOGENESIS INHIBITOR 1-ASSOCIATED PROTEIN 2
HS20392CHARGED MULTIVESICULAR BODY PROTEIN
HS20393TWEETY-RELATED
HS20394PROTEIN SIDEKICK
HS20395CDC42 EFFECTOR PROTEIN BORG
HS20396EPITHELIAL MEMBRANE PROTEIN-RELATED
HS20397HEPARAN SULFATE SULFOTRANSFERASE
HS203983BP-1 RELATED RHOGAP
HS20399RING FINGER PROTEIN 222
HS20400NUCLEAR DISTRIBUTION PROTEIN NUDE HOMOLOG 1
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