About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS20201KH DOMAIN CONTAINING RNA BINDING PROTEIN
HS20202ILGF DOMAIN-CONTAINING PROTEIN
HS20203RFX TRANSCRIPTION FACTOR FAMILY
HS20204
HS20205CHROMOSOME TRANSMISSION FIDELITY FACTOR 18
HS20206ARF-GAP WITH DUAL PH DOMAIN-CONTAINING PROTEIN 1-LIKE PROTEIN
HS20207RHO FAMILY GTPASE
HS20208
HS20209PROTEIN NJMU-R1
HS20210ZONA PELLUCIDA SPERM-BINDING PROTEIN 3
HS20211ZONA PELLUCIDA SPERM-BINDING PROTEIN 3
HS20212ZONA PELLUCIDA SPERM-BINDING PROTEIN 3
HS20213ZONA PELLUCIDA SPERM-BINDING PROTEIN 3
HS20214ZONA PELLUCIDA SPERM-BINDING PROTEIN 3
HS20215ZONA PELLUCIDA SPERM-BINDING PROTEIN 3
HS20216ZONA PELLUCIDA SPERM-BINDING PROTEIN 3
HS20217CD7
HS20218
HS20219TRINUCLEOTIDE REPEAT-CONTAINING GENE 6
HS20220SEPTIN
HS20221SI:CH211-198C19.1-RELATED
HS20222SI:CH211-198C19.1-RELATED
HS20223SI:CH211-198C19.1-RELATED
HS20224GEO05313P1
HS20225SMALL UBIQUITIN-RELATED MODIFIER
HS20226FROUNT PROTEIN-RELATED
HS20227GOLGI-LOCALIZED, GAMMA-ADAPTIN EAR CONTAINING, ARF BINDING PROTEIN
HS20228RIBOSOMAL PROTEIN S7
HS20229EIF4G DOMAIN PROTEIN
HS20230SOLUTE CARRIER FAMILY 25
HS20231PHOSPHATIDYLINOSITOL TRANSFER PROTEIN
HS20232VOLTAGE-DEPENDENT CALCIUM CHANNEL GAMMA-1 SUBUNIT-RELATED
HS20233VOLTAGE-DEPENDENT CALCIUM CHANNEL GAMMA SUBUNIT
HS20234TRANSPOSASE-RELATED
HS20235AMINOACYL TRNA SYNTHASE COMPLEX-INTERACTING MULTIFUNCTIONAL PROTEIN
HS20236PARVALBUMIN ALPHA
HS20237PARVALBUMIN ALPHA
HS20238PARVALBUMIN ALPHA
HS20239SERINE/THREONINE-PROTEIN KINASE LMTK1
HS20240
HS20241DYSFERLIN-RELATED
HS20242BRAIN PROTEIN I3
HS20243BRAIN-SPECIFIC ANGIOGENESIS INHIBITOR 1-ASSOCIATED PROTEIN 2
HS20244PENTRAXIN
HS20245DENTIN MATRIX PROTEIN 4 PROTEIN FAM20
HS20246RETINOIC ACID INDUCED 1/TRANSCRIPTION FACTOR 20
HS20247STEROL REGULATORY ELEMENT-BINDING PROTEIN
HS20248VHS DOMAIN CONTAINING PROTEIN FAMILY
HS20249PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT SDS22-RELATED
HS20250VACUOLAR IMPORT AND DEGRADATION PROTEIN 24
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