About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS19901
HS19902ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE
HS19903CHROMOBOX PROTEIN HOMOLOG 2
HS19904BONE MORPHOGENETIC PROTEIN INHIBITOR, NOGGIN
HS19905PHOSPHATIDYLCHOLINE TRANSFER PROTEIN
HS19906
HS19907PHOSPHOINOSITIDE-INTERACTING PROTEIN FAMILY MEMBER
HS19908
HS19909ADIPOR/PROGESTIN RECEPTOR-RELATED
HS19910
HS19911THYROTROPH EMBRYONIC FACTOR RELATED
HS19912CHECKPOINT SUPPRESSOR 1-LIKE, ISOFORM A-RELATED
HS19913PHOSPHOINOSITIDE-INTERACTING PROTEIN FAMILY MEMBER
HS19914PROTEIN SHISA-9-RELATED
HS19915ZINC PHOSPHODIESTERASE ELAC PROTEIN 2
HS19916DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED
HS19917PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1
HS19918ELECTRON TRANSPORT PROTIN SCO1/SENC FAMILY MEMBER
HS19919CALCIUM BINDING PROTEINS
HS19920PROTEIN NATD1
HS19921-
HS19922RNA-BINDING PROTEIN
HS19923PLECKSTRIN HOMOLOGY PH DOMAIN-CONTAINING PROTEIN
HS19924RETINOIC ACID INDUCED 1/TRANSCRIPTION FACTOR 20
HS19925SERINE/THREONINE-PROTEIN KINASE SBK1
HS19926DILUTE DOMAIN-CONTAINING PROTEIN YPR089W
HS19927PROTEIN ENHANCER OF SEVENLESS 2B
HS19928UNCHARACTERIZED
HS19929TANDEM PH DOMAIN CONTAINING PROTEIN
HS19930NEUROPEPTIDES RECEPTOR
HS19931EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 7
HS19932VOLTAGE-DEPENDENT CALCIUM CHANNEL GAMMA SUBUNIT
HS19933APOLIPOPROTEIN L
HS19934APOLIPOPROTEIN L
HS1993560S RIBOSOMAL PROTEIN L3-RELATED
HS19936FI19922P1-RELATED
HS19937GRANULIN
HS19938RUN AND SH3 DOMAIN CONTAINING
HS1993960S RIBOSOMAL PROTEIN L27
HS19940INTERFERON-INDUCED PROTEIN 35/NMI N-MYC/STAT INTERACTING PROTEIN
HS19941SUBGROUP IIII AMINOTRANSFERASE
HS19942SHORT-CHAIN DEHYDROGENASE/REDUCTASE
HS19943VOLTAGE-GATED POTASSIUM CHANNEL
HS19944SODIUM/DICARBOXYLATE SYMPORTER-RELATED
HS19945REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS19946NERVE GROWTH FACTOR NGF -RELATED
HS19947LAR INTERACTING PROTEIN LIP -RELATED PROTEIN
HS19948LAR INTERACTING PROTEIN LIP -RELATED PROTEIN
HS19949NUCLEOBINDIN
HS19950CYCLINS
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