About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS19601PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
HS19602C-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 180
HS19603MARVEL-CONTAINING POTENTIAL LIPID RAFT-ASSOCIATED PROTEIN
HS19604ACTIN BUNDLING/MISSING IN METASTASIS-RELATED
HS19605TRANSMEMBRANE PROTEIN 65
HS19606PORCUPINE
HS19607TRANSCRIPTION FACTOR E2F
HS19608RADICAL SAM PROTEINS
HS19609SOX TRANSCRIPTION FACTOR
HS19610
HS19611NEURENSIN 1-RELATED
HS19612
HS19613SODIUM/CHLORIDE DEPENDENT TRANSPORTER
HS19614RETROTRANSPOSON
HS19615INSULIN-LIKE GROWTH FACTOR I
HS19616REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS19617
HS19618INSULIN-LIKE GROWTH FACTOR I
HS19619INSULIN-LIKE GROWTH FACTOR I
HS19620INSULIN-LIKE GROWTH FACTOR I
HS19621PHOSPHOLIPID ACYLTRANSFERASE
HS19622IROQUOIS-CLASS HOMEODOMAIN PROTEIN IRX
HS19623REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS19624IROQUOIS-CLASS HOMEODOMAIN PROTEIN IRX
HS19625IROQUOIS-CLASS HOMEODOMAIN PROTEIN IRX
HS19626REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS19627ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
HS19628PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE
HS19629POLY(A) RNA POLYMERASE
HS19630REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS19631ADENYLATE CYCLASE TYPE 1
HS19632MALE FERTILITY FACTOR KL5
HS19633RHO GUANINE EXCHANGE FACTOR-RELATED
HS19634CELL ADHESION MOLECULE
HS19635CELL ADHESION MOLECULE
HS19636PROTEIN CORDON-BLEU
HS19637ENDONUCLEASE-RELATED
HS19638GROWTH FACTOR RECEPTOR-BOUND PROTEIN
HS19639
HS19640GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE
HS19641
HS19642SPIRE
HS19643V-TYPE PROTON ATPASE SUBUNIT C
HS19644
HS19645ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE
HS19646REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS19647E3 UBIQUITIN-PROTEIN LIGASE UBR5
HS19648LYSINE-RICH CEACAM1 CO-ISOLATED PROTEIN LYRIC PROTEIN
HS19649SQUALENE MONOOXYGENASE
HS19650NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED
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