About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS19401CELL CYCLE PROGRESSION PROTEIN 1
HS19402LENS EPITHELIAL CELL PROTEIN LEP503
HS19403SHC TRANSFORMING PROTEIN
HS19404FAD SYNTHETASE-RELATED FMN ADENYLYLTRANSFERASE
HS19405EPHRIN
HS19406EPHRIN
HS19407EPHRIN
HS19408RAG1-ACTIVATING PROTEIN 1
HS19409E3 UBIQUITIN-PROTEIN LIGASE TRIM36-RELATED
HS19410TRANSMEMBRANE PROTEIN 107
HS19411KERATINOCYTE-ASSOCIATED PROTEIN 2
HS19412S100 CALCIUM-BINDING PROTEIN
HS19413S100 CALCIUM-BINDING PROTEIN
HS19414S100 CALCIUM-BINDING PROTEIN
HS19415SORTING NEXIN 17 AND 27
HS19416NEUROTRANSMITTER GATED ION CHANNEL
HS19417EUKARYOTE SPECIFIC DSRNA BINDING PROTEIN
HS19418SMALL CONDUCTANCE CALCIUM-ACTIVATED POTASSIUM CHANNEL
HS1941940S RIBOSOMAL PROTEIN S27
HS19420LD44762P
HS19421PROTEIN FAM189A
HS19422FARNESYL-PYROPHOSPHATE SYNTHETASE
HS19423RUN AND SH3 DOMAIN CONTAINING
HS19424RUN AND SH3 DOMAIN CONTAINING
HS19425
HS19426HISTONE-LYSINE N-METHYLTRANSFERASE ASH1
HS19427MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S29
HS19428GLUCOSYLCERAMIDASE
HS19429E3 UBIQUITIN-PROTEIN LIGASE PRAJA
HS19430RNA POLYMERASE III DNA DIRECTED -RELATED
HS19431INTEGRIN ALPHA
HS19432FATTY ACID BINDING PROTEIN
HS19433
HS19434CARBONIC ANHYDRASE
HS19435CIRCADIAN-ASSOCIATED TRANSCRIPTIONAL REPRESSOR
HS19436U4/U6-ASSOCIATED RNA SPLICING FACTOR-RELATED
HS19437CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEIN
HS19438THREONINE-TRNA LIGASE
HS19439ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
HS19440SCC1 / RAD21 FAMILY MEMBER
HS19441
HS19442LONGEVITY ASSURANCE FACTOR 1 LAG1
HS19443CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS
HS19444HISTONE-LYSINE N-METHYLTRANSFERASE EGGLESS
HS19445SERINE/THREONINE-PROTEIN KINASE DOA-RELATED
HS19446
HS19447-
HS19448PYRUVATE KINASE
HS19449I[[H]] CHANNEL, ISOFORM E
HS19450NADH-UBIQUINONE OXIDOREDUCTASE FLAVOPROTEIN 1 NDUFV1
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