About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS19301HEAT SHOCK REGULATED 2
HS19302
HS19303KINESIN-LIKE PROTEIN KLP-3
HS19304PRE-MRNA-SPLICING FACTOR CWF18
HS19305BEIGE/BEACH-RELATED
HS19306TUMOR NECROSIS FACTOR RECEPTOR
HS19307HISTONE-LYSINE N-METHYLTRANSFERASE SETD2
HS19308HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED
HS19309
HS19310
HS19311URIDINE PHOSPHORYLASE
HS19312STATHMIN
HS19313BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED
HS19314FATTY ACID BINDING PROTEIN
HS19315AUTOSOMAL HIGHLY CONSERVED PROTEIN
HS19316ATAXIN 1
HS19317INTEGRIN ALPHA
HS19318UNCHARACTERIZED
HS19319
HS19320ZINC FINGER-CONTAINING
HS19321DUDULIN-RELATED
HS19322C-REACTIVE PROTEIN-RELATED
HS19323C-REACTIVE PROTEIN-RELATED
HS19324DUDULIN-RELATED
HS19325CYSTEINE-RICH SECRETORY PROTEIN-RELATED
HS19326NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA SUBUNIT-RELATED
HS19327FAST LEU-RICH DOMAIN-CONTAINING
HS19328SODIUM/POTASSIUM-TRANSPORTING ATPASE SUBUNIT ALPHA
HS19329DENN DOMAIN-CONTAINING PROTEIN 4
HS19330SUGAR TRANSPORTER
HS19331G-PROTEIN COUPLED RECEPTOR
HS19332STEROL O-ACYLTRANSFERASE
HS19333ZINC FINGER PROTEIN
HS19334INO80 COMPLEX SUBUNIT C
HS19335N-ACETYLGALACTOSAMINYLTRANSFERASE
HS19336TRANSMEMBRANE PROTEIN
HS19337DOMON DOMAIN-CONTAINING PROTEIN FRRS1L
HS19338ALPHA-1,3/1,6-MANNOSYLTRANSFERASE ALG2
HS19339SEC61 SUBUNIT BETA
HS19340NUCLEAR HORMONE RECEPTOR
HS19341SYNTAXIN
HS19342ENDOPLASMIC RETICULUM RESIDENT PROTEIN 44
HS19343ROLLING PEBBLES, ISOFORM B
HS19344REGULATOR OF MICROTUBULE DYNAMICS PROTEIN
HS19345
HS19346HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED
HS19347UNCHARACTERIZED
HS19348PROTEIN PHOSPHATASE 2C
HS19349CADHERIN-23
HS19350RAD, GEM/KIR FAMILY MEMBER 2, ISOFORM C
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