About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS19451
HS19452AGAP004733-PA
HS19453
HS19454BLOM7
HS19455G-PROTEIN COUPLED RECEPTOR
HS19456INWARD RECTIFIER POTASSIUM CHANNEL
HS19457MYOSIN HEAVY CHAIN, NON-MUSCLE
HS19458
HS19459PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17
HS1946060S RIBOSOMAL PROTEIN L18
HS19461SPHINGOSINE KINASE
HS19462GUANYL-NUCLEOTIDE EXCHANGE FACTOR
HS19463PENTRAXIN
HS19464LEUKOCYTE RECEPTOR CLUSTER LRC MEMBER 1
HS19465TRANSMEMBRANE CHANNEL-RELATED
HS19466PORCUPINE
HS1946730S 40S RIBOSOMAL PROTEIN
HS19468ATAXIN 2-BINDING PROTEIN 1-RELATED
HS1946980 KDA MCM3-ASSOCIATED PROTEIN
HS19470CDC42 EFFECTOR PROTEIN BORG
HS19471GLUTAMATE-RICH WD REPEAT-CONTAINING PROTEIN 1
HS19472FOLLICULIN FAMILY MEMBER
HS19473LEUKOCYTE RECEPTOR CLUSTER MEMBER 9
HS19474TWEETY-RELATED
HS19475JOSEPHIN 1, 2
HS19476UBIQUITIN-CONJUGATING ENZYME E2
HS19477PROTEIN SHISA-9-RELATED
HS19478ZINC FINGER AND SCAN DOMAIN-CONTAINING
HS19479THYROTROPH EMBRYONIC FACTOR RELATED
HS19480COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
HS19481KRUEPPEL-LIKE TRANSCRIPTION FACTOR
HS19482MYOCARDIN-RELATED TRANSCRIPTION FACTOR-RELATED
HS19483PHOSPHATIDYLINOSITOL TRANSFER PROTEIN
HS19484IONOTROPIC GLUTAMATE RECEPTOR
HS19485SERINE/THREONINE-PROTEIN KINASE
HS19486VOLTAGE-DEPENDENT CALCIUM CHANNEL GAMMA SUBUNIT
HS19487VOLTAGE-DEPENDENT CALCIUM CHANNEL GAMMA SUBUNIT
HS19488CATION TRANSPORTING ATPASE
HS19489VOLTAGE-DEPENDENT CALCIUM CHANNEL GAMMA-1 SUBUNIT-RELATED
HS19490TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 6
HS19491RNA-BINDING PROTEIN
HS19492COILED-COIL DOMAIN-CONTAINING PROTEIN 106
HS19493SI:CH211-232M10.4-RELATED
HS19494JNK/SAPK-ASSOCIATED PROTEIN
HS19495CALCIUM BINDING PROTEINS
HS19496EPITHELIAL MEMBRANE PROTEIN-RELATED
HS19497AUTOPHAGY PROTEIN 12
HS19498HYDROLASE
HS19499FORKHEAD BOX PROTEIN J2 FAMILY MEMBER
HS19500EPSIN/ENT-RELATED
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