About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS19251AGAP004664-PA
HS19252CHROMOBOX PROTEIN
HS19253PX DOMAIN-CONTAINING PROTEIN
HS19254SRC-ASSOCIATED ADAPTOR PROTEIN
HS19255PROTEIN ZERKNUELLT 1-RELATED
HS19256HOMEOBOX PROTEIN ABDOMINAL-B
HS19257HOMEOBOX PROTEIN HOX-A11-RELATED
HS19258SEGMENTATION PROTEIN FUSHI TARAZU-LIKE PROTEIN
HS192593-HYDROXYISOBUTYRATE DEHYDROGENASE-RELATED
HS19260SKICH DOMAIN-CONTAINING PROTEIN
HS19261JUXTAPOSED WITH ANOTHER ZINC FINGER PROTEIN 1
HS19262CYCLIC-AMP RESPONSE ELEMENT BINDING PROTEIN
HS19263SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE
HS19264CHIMERIN FAMILY MEMBER
HS19265PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP7/14
HS19266GLYCOLIPID TRANSFER PROTEIN-RELATED
HS19267COLLAGEN ALPHA
HS192682-HYDROXYACYL-COA LYASE
HS19269MOLTING PROTEIN MLT-4
HS19270HISTONE DEACETYLASE 9-RELATED
HS19271BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST
HS19272SH3 DOMAIN-CONTAINING PROTEIN
HS19273KRUEPPEL-LIKE TRANSCRIPTION FACTOR
HS19274SI:CH211-196P9.1-RELATED
HS19275DYNEIN HEAVY CHAIN
HS19276GUANINE NUCLEOTIDE EXCHANGE FACTOR
HS19277SOLUTE CARRIER FAMILY 40 MEMBER
HS19278SODIUM/CHLORIDE DEPENDENT TRANSPORTER
HS19279SODIUM/CHLORIDE DEPENDENT TRANSPORTER
HS19280SODIUM/CHLORIDE DEPENDENT TRANSPORTER
HS19281FORMIN HOMOLOGY 2 DOMAIN CONTAINING, ISOFORM I
HS19282NUCLEAR HORMONE RECEPTOR
HS19283C-TYPE LECTIN DOMAIN FAMILY 20 MEMBER A-RELATED
HS19284TENASCIN
HS19285STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
HS19286SPHINGOMYELINASE FAMILY MEMBER
HS19287BAX INHIBITOR-RELATED
HS19288GEO13361P1-RELATED
HS19289DYNACTIN 1-RELATED MICROTUBULE-BINDING
HS19290
HS19291STAR-RELATED LIPID TRANSFER PROTEIN 9
HS19292E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED
HS19293PHOSPHATIDYLINOSITOL SYNTHASE
HS19294
HS19295RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR-RELATED
HS19296PROTEIN NAKED CUTICLE
HS19297PACHYTENE CHECKPOINT PROTEIN 2
HS19298BROMODOMAIN CONTAINING PROTEIN
HS19299ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN
HS19300P25 ALPHA-RELATED
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