About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS19501SERINE/THREONINE-PROTEIN KINASE SBK1
HS19502MICROFIBRILLAR-ASSOCIATED PROTEIN 2
HS19503ATP-BINDING CASSETTE ABC TRANSPORTER-RELATED
HS19504GNAT FAMILY N-ACETYLTRANSFERASE
HS19505PR DOMAIN ZINC FINGER PROTEIN
HS19506INTERLEUKIN 11
HS19507CYTOCHROME C OXIDASE SUBUNIT 6B
HS19508DILUTE DOMAIN-CONTAINING PROTEIN YPR089W
HS19509SOLUTE CARRIER FAMILY 2
HS19510EPH RECEPTOR A5
HS19511TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN
HS19512C-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 180
HS19513MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED
HS19514GUANINE NUCLEOTIDE EXCHANGE FACTOR
HS19515MANNOSE-6-PHOSPHATE RECEPTOR FAMILY MEMBER
HS19516POLYCOMB GROUP PROTEIN
HS19517TYROSINE-PROTEIN KINASE
HS19518GLUTATHIONE S-TRANSFERASE KAPPA
HS19519RAP GTPASE-ACTIVATING PROTEIN
HS19520ENOLASE
HS19521CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18
HS19522CHLORIDE CHANNEL PROTEIN 2
HS19523ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
HS19524PROTEIN FAM131B-RELATED
HS19525ZYXIN/TRIP6
HS19526NEP1/MRA1
HS19527NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING
HS19528INHIBITOR OF GROWTH PROTEIN
HS19529C-TYPE NATRIURETIC PEPTIDE
HS19530CONDENSIN
HS19531PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY G MEMBER 7
HS19532TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 1A
HS19533TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 6
HS195341-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE FAMILY MEMBER
HS19535MITOCHONDRIAL 39S RIBOSOMAL PROTEIN L51
HS19536SYNAPTOBREVIN FAMILY MEMBER
HS19537TAPASIN
HS19538COMPLEMENT COMPONENT 1, S SUBCOMPONENT-RELATED
HS19539TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 5
HS19540FATTY ACID BINDING PROTEIN
HS19541TYROSINE-PROTEIN PHOSPHATASE CORKSCREW
HS19542CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED
HS19543PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
HS19544WNT RELATED
HS19545RHO FAMILY GTPASE
HS19546MYELOID LEUKEMIA FACTOR
HS19547ATROPHIN-RELATED
HS19548ATROPHIN-RELATED
HS19549KRUEPPEL-LIKE TRANSCRIPTION FACTOR
HS19550TRIOSEPHOSPHATE ISOMERASE
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