About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS19651SI:DKEY-122A22.2
HS19652FRIEND OF GATA2-RELATED
HS19653DENDRITIC CELL-SPECIFIC TRANSMEMBRANE PROTEIN
HS19654HYDRANTOINASE/DIHYDROPYRIMIDINASE FAMILY MEMBER
HS19655REGULATING SYNAPTIC MEMBRANE EXOCYTOSIS PROTEIN
HS19656U3 SMALL NUCLEOLAR RNA U3 SNORNA ASSOCIATED PROTEIN
HS19657MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED
HS19658
HS19659FRIZZLED
HS19660LD33804P
HS19661PROTEIN MMS22-LIKE
HS19662REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS19663PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
HS19664PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
HS19665POU DOMAIN
HS19666UNCHARACTERIZED
HS19667PROTEIN CBG26694
HS19668METAXIN RELATED
HS19669METHYLTRANSFERASE
HS19670ARGININE/SERINE-RICH PROTEIN PNISR
HS19671
HS19672UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
HS19673THIOSULFATE SULFURTRANSFERASE RDL2, MITOCHONDRIAL-RELATED
HS19674GLIAL FIBRILLARY ACIDIC PROTEIN
HS19675ODD-SKIPPED - RELATED
HS19676MALIC ENZYME-RELATED
HS19677SERINE PROTEASE
HS19678CLATHRIN ASSEMBLY PROTEIN
HS19679DOPEY-RELATED
HS19680E3 UBIQUITIN-PROTEIN LIGASE E3D FAMILY MEMBER
HS19681LP06937P
HS19682BTK-BINDING PROTEIN-RELATED
HS19683PRION-LIKE- Q/N-RICH -DOMAIN-BEARING PROTEIN PROTEIN 44
HS196842-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED
HS19685REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS19686RECEPTOR-BINDING CANCER ANTIGEN EXPRESSED ON SISO CELLS CANCER ASSOCIATED SURFACE ANTIGEN RCAS1 ESTROGEN RECEPTOR-BINDING FRAGMENT- ASSOCIATED GENE 9 PROTEIN
HS19687MIXED LINEAGE PROTEIN KINASE
HS19688MICROTUBULE-ASSOCIATED PROTEIN/SYNTAPHILIN
HS19689MICROTUBULE-ASSOCIATED PROTEIN/SYNTAPHILIN
HS19690TGF-BETA FAMILY
HS19691ENHANCER OF YELLOW 2 TRANSCRIPTION FACTOR
HS19692THYROTROPIN-RELEASING HORMONE RECEPTOR
HS19693TRANSMEMBRANE PROTEIN 74
HS19694TETRATRICOPEPTIDE REPEAT PROTEIN
HS19695EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E
HS19696NEUROHYPOPHYSIAL HORMONES, N-TERMINAL DOMAIN CONTAINING PROTEIN
HS1969740S RIBOSOMAL PROTEIN S10
HS19698ENVOPLAKIN
HS19699ENVOPLAKIN
HS19700SOLUTE CARRIER FAMILY 52
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