About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS19801RAD52 MOTIF-CONTAINING PROTEIN 1
HS19802TYPE I INTERFERON
HS19803TOL-PAL SYSTEM PROTEIN TOLA
HS19804COILED-COIL DOMAIN-CONTAINING PROTEIN 103
HS19805MYOTONIC DYSTROPHY S/T KINASE-RELATED
HS19806RHO/RAC/CDC GTPASE-ACTIVATING PROTEIN
HS19807RHO/RAC/CDC GTPASE-ACTIVATING PROTEIN
HS19808NEURABIN
HS19809GRANULOCYTE COLONY-STIMULATING FACTOR
HS19810IMPORTIN BETA
HS19811PHD/F-BOX CONTAINING PROTEIN
HS19812B-BOX DOMAIN CONTAINING
HS19813HISTONE H2A
HS19814WD-REPEAT PROTEIN-RELATED
HS19815
HS19816MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15
HS19817REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS19818THO COMPLEX SUBUNIT 6 HOMOLOG
HS19819IP01015P-RELATED
HS19820ZINC FINGER PROTEIN
HS19821
HS19822SYNTAXIN
HS19823KRUEPPEL-LIKE TRANSCRIPTION FACTOR
HS19824ZINC FINGER PROTEIN
HS19825
HS19826INTERMEDIATE FILAMENT
HS19827NUCLEOSIDE DIPHOSPHATE KINASE
HS19828GUANINE NUCLEOTIDE EXCHANGE FACTOR
HS19829
HS19830PROTEIN CASC3
HS19831MAJOR VAULT PROTEIN
HS19832ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1
HS19833
HS19834ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD
HS19835HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN
HS19836NG5
HS19837
HS19838NUCLEAR PROTEIN 1 AND 2
HS19839UNCHARACTERIZED
HS19840
HS19841NFATC2-INTERACTING PROTEIN
HS19842SPINSTER
HS19843HISTIDINE-RICH GLYCOPROTEIN
HS19844ATAXIN 2-RELATED
HS19845
HS19846CT120 PROTEIN
HS19847MITOGEN-ACTIVATED PROTEIN KINASE
HS19848ZINC FINGER PROTEIN
HS19849PHOSPHATIDYLINOSITOL SYNTHASE
HS19850SERINE/THREONINE-PROTEIN KINASE TAO1-LIKE PROTEIN
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