About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS19951
HS19952TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN
HS19953CYTOGLOBIN
HS19954FAS-BINDING FACTOR 1
HS19955
HS19956UNCHARACTERIZED
HS19957PROTEIN ENHANCER OF SEVENLESS 2B
HS19958EPSIN/ENT-RELATED
HS19959-
HS19960B9 DOMAIN-CONTAINING
HS19961VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM
HS19962VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM
HS19963IONOTROPIC GLUTAMATE RECEPTOR
HS19964REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS19965ACTIVATING TRANSCRIPTION FACTOR 7 INTERACTING PROTEIN
HS19966EPITHELIAL MEMBRANE PROTEIN-RELATED
HS19967PROTEIN CBG11839-RELATED
HS19968NUCLEOTIDE-BINDING PROTEIN NBP35 YEAST -RELATED
HS19969DEXAMETHASONE-INDUCED PROTEIN
HS19970UNCHARACTERIZED
HS19971PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY SUBUNIT
HS19972SERINE/THREONINE-PROTEIN KINASE
HS19973VOLTAGE-DEPENDENT CALCIUM CHANNEL GAMMA SUBUNIT
HS19974RETINOBLASTOMA-BINDING PROTEIN 6
HS19975
HS19976
HS19977TRINUCLEOTIDE REPEAT-CONTAINING GENE 6
HS19978ACYL CARRIER PROTEIN
HS19979DYNACTIN SUBUNIT 5
HS19980UPF0472 PROTEIN C16ORF72
HS19981UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
HS19982LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR
HS19983LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR
HS19984SI:CH211-196P9.1-RELATED
HS19985-
HS19986PENTRAXIN
HS19987CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER
HS19988RHO GDP-DISSOCIATION INHIBITOR
HS19989MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE
HS19990PEROXISOMAL MEMBRANE PROTEIN PMP34-RELATED
HS19991ZINC FINGER PROTEIN 598
HS19992
HS19993SYNAPTOGYRIN
HS19994ALR/ERV
HS19995DEVELOPMENTALLY-REGULATED GTP-BINDING PROTEIN 2
HS19996MYOSIN VII, XV
HS19997LETHAL 2 GIANT LARVAE PROTEIN
HS19998TBP-1 INTERACTING PROTEIN
HS19999BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR
HS20000FORMIN-LIKE PROTEIN
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