About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS20101MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 25
HS20102ANTIGEN BSP, PUTATIVE-RELATED
HS20103TITIN
HS20104CHROMATIN COMPLEXES SUBUNIT BAP18-RELATED
HS20105B-BOX DOMAIN CONTAINING
HS20106AKT1 SUBSTRATE 1 PROTEIN
HS20107RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER
HS20108MIP08469P
HS20109ALPHA-MANNOSIDE BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE
HS20110
HS20111SEC14 RELATED PROTEIN
HS20112PENTRAXIN
HS20113DENTIN MATRIX PROTEIN 4 PROTEIN FAM20
HS20114NUCLEAR BODY PROTEIN SP140
HS20115
HS20116NUCLEAR BODY PROTEIN SP140
HS20117PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 27
HS20118
HS20119RNA AND EXPORT FACTOR BINDING PROTEIN
HS20120RHO GDP-DISSOCIATION INHIBITOR
HS20121CENTROCORTIN FAMILY MEMBER
HS20122
HS20123DNA HELICASE RECQ FAMILY MEMBER
HS20124E3 UBIQUITIN-PROTEIN LIGASE TRIM
HS20125
HS20126XYLOSYLTRANSFERASE OXT
HS20127
HS20128-
HS20129PDZ DOMAIN CONTAINING PROTEIN
HS20130CALCIUM-TRANSPORTING ATPASE
HS20131
HS20132RAB GTPASE-BINDING EFFECTOR PROTEIN
HS20133TRANSMEMBRANE GTPASE FZO1
HS20134NUDIX HYDROLASE
HS20135MITOGEN-ACTIVATED PROTEIN KINASE
HS20136PHOSPHATIDYLGLYCEROL PHOSPHOLIPASE C
HS20137PROTEIN YIPPEE-LIKE CG15309-RELATED
HS20138V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT
HS20139SPRY DOMAIN CONTAINING SOCS BOX PROTEIN
HS2014028S RIBOSOMAL PROTEIN S34, MITOCHONDRIAL
HS20141NUCLEOSIDE DIPHOSPHATE KINASE
HS20142JNK/SAPK-ASSOCIATED PROTEIN
HS20143GEO05313P1
HS20144CRAMPED PROTEIN
HS20145DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 7B
HS20146PROTEIN PM1
HS20147PROTEIN NATD1
HS20148
HS20149PLECKSTRIN HOMOLOGY PH DOMAIN-CONTAINING PROTEIN
HS20150INWARD RECTIFIER POTASSIUM CHANNEL
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