About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS20251SH3 MULTIPLE DOMAIN
HS20252TRANSDUCIN BETA-LIKE 3
HS20253TNF RECEPTOR ASSOCIATED FACTOR
HS20254RIBOSOMAL S SUBUNIT
HS20255NADH-UBIQUINONE OXIDOREDUCTASE PDSW SUBUNIT
HS2025660S RIBOSOMAL PROTEIN L3-RELATED
HS20257TEX2 PROTEIN-RELATED
HS20258ZINC FINGER PROTEIN
HS20259METHIONINE-R-SULFOXIDE REDUCTASE B1
HS20260HEPARAN SULFATE SULFOTRANSFERASE
HS20261ACYLPYRUVASE
HS20262BETA LACTAMASE DOMAIN
HS20263SOLUTE CARRIER FAMILY 5
HS20264NITRATE, FORMATE, IRON DEHYDROGENASE
HS20265IP01015P-RELATED
HS20266FORMIN HOMOLOGY 2 FAMILY MEMBER
HS202673BP-1 RELATED RHOGAP
HS20268AQUAPORIN TRANSPORTER
HS20269METEORIN-LIKE PROTEIN
HS20270
HS20271E3 SUMO-PROTEIN LIGASE CBX4
HS20272TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN
HS20273ALPHA-GLUCOSIDASE
HS20274DED DOMAIN-CONTAINING PROTEIN
HS20275ALPHA-GLUCOSIDASE
HS20276IRE1-RELATED
HS20277TEX2 PROTEIN-RELATED
HS20278
HS20279AXIN
HS20280CENTROSOMAL PROTEIN OF 112 KDA
HS20281RIBOSOMAL PROTEIN S6 KINASE
HS20282VOLTAGE-DEPENDENT CALCIUM CHANNEL GAMMA SUBUNIT
HS20283GUANYL-NUCLEOTIDE EXCHANGE FACTOR
HS20284SMALL INTEGRAL MEMBRANE PROTEIN 10
HS20285RHO FAMILY GTPASE
HS20286SERINE/THREONINE-PROTEIN KINASE 19
HS20287DOM-3 RELATED
HS20288PEROXISOMAL MEMBRANE PROTEIN PMP34-RELATED
HS20289ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
HS20290KELCH PROTEIN
HS20291METALLOPROTEASE
HS20292NAD DEPENDENT EPIMERASE/DEHYDRATASE
HS20293MODULATOR OF SMOOTHENED PROTEIN
HS20294CENTROCORTIN FAMILY MEMBER
HS20295TRANSMEMBRANE PROTEIN 180
HS20296IMMUNOGLOBULIN SUPERFAMILY MEMBER 6
HS20297ER LUMEN PROTEIN RETAINING RECEPTOR
HS20298PROMETHIN
HS20299G_PROTEIN_RECEP_F1_2 DOMAIN-CONTAINING PROTEIN
HS20300COAGULATION FACTOR
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