About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS20401ACYL-COA SYNTHETASE
HS20402ACYL-COA SYNTHETASE
HS20403METEORIN-LIKE PROTEIN
HS20404BETA-TUBULIN COFACTOR D
HS20405UNCHARACTERIZED
HS20406FRUCTOSAMINE 3 KINASE-RELATED PROTEIN
HS20407ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 16
HS20408EPSIN/ENT-RELATED
HS20409MIP08469P
HS20410COPROPORPHYRINIGEN III OXIDASE
HS20411
HS20412E3 UBIQUITIN-PROTEIN LIGASE TRIM
HS20413CLAUDIN
HS20414HEPATOCYTE GROWTH FACTOR-REGULATED TYROSINE KINASE SUBSTRATE
HS2041539S RIBOSOMAL PROTEIN L12
HS20416PDF RECEPTOR-LIKE PROTEIN-RELATED
HS20417G-PROTEIN COUPLED RECEPTOR
HS20418E3 UBIQUITIN-PROTEIN LIGASE TRIM
HS20419TUBULIN
HS20420
HS20421ANTI-SILENCING PROTEIN 1
HS20422CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE
HS20423POLYCOMB GROUP PROTEIN
HS204243-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE
HS20425DNAJ HOMOLOG SUBFAMILY C MEMBER
HS20426RGS-GAIP INTERACTING PROTEIN GIPC
HS20427E3 UBIQUITIN-PROTEIN LIGASE TRIM
HS20428SHORT-CHAIN DEHYDROGENASE/REDUCTASE
HS20429QUEUINE TRNA-RIBOSYLTRANSFERASE CATALYTIC SUBUNIT 1
HS20430DYNAMIN
HS20431
HS20432TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN
HS20433LIPID PHOSPHATE PHOSPHATASE
HS20434
HS20435ADHESION G-PROTEIN COUPLED RECEPTOR
HS20436ADHESION G-PROTEIN COUPLED RECEPTOR
HS20437G-PROTEIN COUPLED RECEPTOR FAMILY 1 MEMBER
HS20438LONG-CHAIN FATTY ACID TRANSPORT PROTEIN
HS20439E3 UBIQUITIN-PROTEIN LIGASE TRIM
HS20440TAX1 BINDING PROTEIN-RELATED
HS20441ZINC FINGER AND SCAN DOMAIN-CONTAINING
HS20442KRUEPPEL-LIKE TRANSCRIPTION FACTOR
HS20443ZINC FINGER AND SCAN DOMAIN-CONTAINING
HS204446-PHOSPHOGLUCONOLACTONASE
HS20445PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE/GLYCOSYLTRANSFERASE 25 FAMILY MEMBER
HS20446SPERMATHECAL PHYSIOLOGY VARIANT
HS20447LIM/HOMEOBOX PROTEIN LHX
HS20448COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN-CONTAINING PROTEIN 5
HS20449CATION-TRANSPORTING ATPASE-RELATED
HS20450KINETOCHORE-ASSOCIATED PROTEIN DSN1 HOMOLOG
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