About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS20151ELONGATION FACTOR TU-RELATED
HS20152PROTEIN FOLDING REGULATOR
HS20153GH04784P
HS20154L-ASPARTATE DEHYDROGENASE-RELATED
HS20155GLYCOGEN SYNTHASE
HS20156DNA POLYMERASE CATALYTIC SUBUNIT
HS20157RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY
HS20158SOLUTE CARRIER FAMILY 17
HS20159SODIUM/CHLORIDE DEPENDENT TRANSPORTER
HS20160PHD-TYPE DOMAIN-CONTAINING PROTEIN
HS20161EPIDERMAL GROWTH FACTOR RECEPTOR KINASE SUBSTRATE EPS8-RELATED PROTEIN
HS20162NUCLEOSIDE DIPHOSPHATE KINASE
HS20163EXPORTIN-6
HS20164UNCHARACTERIZED
HS20165HIRA-INTERACTING PROTEIN 3
HS20166BTB/POZ DOMAIN-CONTAINING ADAPTER FOR CUL3-MEDIATED RHOA DEGRADATION PROTEIN FAMILY MEMBER
HS20167PROTEIN CBR-CLEC-78
HS20168ASPARTATE BETA-HYDROXYLASE DOMAIN-CONTAINING PROTEIN 2
HS20169CALCIUM-BINDING PROTEIN 1-RELATED
HS20170AGAP004733-PA
HS20171IMMEDIATE EARLY RESPONSE GENE
HS20172VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1
HS20173SPERMATOGENESIS ASSOCIATED 11-RELATED
HS20174GDP-L-FUCOSE SYNTHASE
HS20175TFIIF-ALPHA
HS20176ADHESION G-PROTEIN COUPLED RECEPTOR
HS20177
HS20178REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS20179RAB GTPASE-ACTIVATING PROTEIN 1-LIKE
HS20180ELONGATION FACTOR TU-RELATED
HS20181GALECTIN
HS20182
HS20183RNA-BINDING PROTEIN LUC7-RELATED
HS20184ANKYRIN REPEAT DOMAIN 40
HS20185ACP24A4-RELATED
HS20186TRANSDUCER OF ERBB2 TOB
HS20187JNK/SAPK-ASSOCIATED PROTEIN
HS20188INTERFERON-INDUCED PROTEIN 44
HS20189INTERFERON-INDUCED PROTEIN 44
HS20190LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR
HS20191MYELOID-ASSOCIATED DIFFERENTIATION MARKER MYADM FAMILY MEMBER
HS20192MYELOID-ASSOCIATED DIFFERENTIATION MARKER MYADM FAMILY MEMBER
HS20193NEUROPEPTIDES RECEPTOR
HS20194PDZ DOMAIN CONTAINING PROTEIN
HS20195DEOXYHYPUSINE SYNTHASE
HS20196GUANINE NUCLEOTIDE-BINDING PROTEIN GAMMA SUBUNIT
HS20197WD40 REPEAT PROTEIN
HS20198DEOXYHYPUSINE SYNTHASE
HS20199IMPORTIN BETA
HS20200INTERLEUKIN-27 SUBUNIT BETA
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