About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS20951
HS20952PLATELET-DERIVED GROWTH FACTOR
HS20953SAD1/UNC-84-LIKE PROTEIN-RELATED
HS20954
HS20955
HS20956HIT FAMILY PROTEIN 1
HS20957ACTIVATING TRANSCRIPTION FACTOR ATF 4/5
HS20958ACTIVE REGULATOR OF SIRT1
HS20959THIOSULFATE SULFERTANSFERASE
HS20960CYTOKINE RECEPTOR
HS20961
HS20962BETA-1,4-MANNOSYL-GLYCOPROTEIN BETA-1,4-N-ACETYLGLUCOSAMINYL-TRANSFERASE
HS20963PROTEIN PHOSPHATASE 2C
HS20964SYNAPTOGYRIN
HS20965DRAB11-RELATED
HS20966DIVALENT CATION TOLERANCE CUTA-RELATED
HS20967RHO FAMILY GTPASE
HS20968GUANYL-NUCLEOTIDE EXCHANGE FACTOR
HS20969UNCHARACTERIZED
HS20970ARF-GAP WITH DUAL PH DOMAIN-CONTAINING PROTEIN 1-LIKE PROTEIN
HS20971ENDONUCLEASE
HS20972PROTEIN CBG26694
HS20973RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATED
HS20974GALECTIN
HS20975ELONGATION FACTOR TU-RELATED
HS20976PROTEIN CBG11839-RELATED
HS20977ANTIGEN BSP, PUTATIVE-RELATED
HS20978FRINGE-RELATED
HS20979B-BOX DOMAIN CONTAINING
HS20980ALPHA-MANNOSIDASE
HS20981N 2 ,N 2 -DIMETHYLGUANOSINE TRNA METHYLTRANSFERASE
HS20982AGAP004733-PA
HS20983
HS20984
HS20985
HS20986REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS20987IMMEDIATE EARLY RESPONSE GENE
HS20988VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1
HS20989CGI-140
HS20990WD40 REPEAT PROTEIN
HS20991GDNF SUBFAMILY OF TGF-BETA FAMILY
HS20992ZINC FINGER PROTEIN
HS20993SPLICING FACTOR YJU2
HS20994MACROGLOBULIN / COMPLEMENT
HS20995MACROGLOBULIN / COMPLEMENT
HS20996VASCULAR CELL ADHESION MOLECULE 1
HS20997VASCULAR CELL ADHESION MOLECULE 1
HS20998VASCULAR CELL ADHESION MOLECULE 1
HS20999VASCULAR CELL ADHESION MOLECULE 1
HS21000VASCULAR CELL ADHESION MOLECULE 1
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