About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS21101B-BOX DOMAIN CONTAINING
HS21102B-BOX DOMAIN CONTAINING
HS21103E3 UBIQUITIN-PROTEIN LIGASE TRIM
HS21104
HS21105ZINC FINGER PROTEIN
HS21106UNCHARACTERIZED
HS21107THIOREDOXIN DOMAIN-CONTAINING PROTEIN 11
HS21108STEREOCILIN RELATED
HS21109GLUTAMATE--TRNA LIGASE
HS21110GOLGI-LOCALIZED, GAMMA-ADAPTIN EAR CONTAINING, ARF BINDING PROTEIN
HS21111CYCLIC NUCLEOTIDE PHOSPHODIESTERASE
HS21112E3 UBIQUITIN-PROTEIN LIGASE TRIM
HS21113B-BOX DOMAIN CONTAINING
HS21114B-BOX DOMAIN CONTAINING
HS21115E3 UBIQUITIN-PROTEIN LIGASE TRIM
HS21116VOLTAGE-DEPENDENT CALCIUM CHANNEL GAMMA SUBUNIT
HS21117RIBOSOMAL PROTEIN S6 KINASE
HS21118PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY SUBUNIT
HS21119ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1
HS21120GUANINE NUCLEOTIDE-BINDING PROTEIN G I /G S /G O GAMMA-13 SUBUNIT
HS21121P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN
HS21122SOLUTE CARRIER FAMILY 5
HS21123UNCHARACTERIZED
HS21124PROTEIN ENHANCER OF SEVENLESS 2B
HS21125BRCA1-ASSOCIATED ATM ACTIVATOR 1
HS21126EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED
HS21127CARBOHYDRATE SULFOTRANSFERASE
HS21128IRE1-RELATED
HS21129
HS21130GTP-BINDING PROTEIN ALPHA SUBUNIT
HS21131POL PROTEIN
HS21132PHD-TYPE DOMAIN-CONTAINING PROTEIN
HS21133PROTEIN SIDEKICK
HS21134ZINC FINGER PROTEIN
HS21135BAT4 PROTEIN-RELATED
HS21136CYTOCHROME P450 FAMILY 3
HS21137CYTOCHROME P450 FAMILY 3
HS21138CHECKPOINT SUPPRESSOR 1-LIKE, ISOFORM A-RELATED
HS21139DILUTE DOMAIN-CONTAINING PROTEIN YPR089W
HS21140ADIPOR/PROGESTIN RECEPTOR-RELATED
HS21141ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 1
HS21142ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 1
HS21143ABC TRANSPORTER G FAMILY MEMBER 28
HS21144UPF0472 PROTEIN C16ORF72
HS21145IONOTROPIC GLUTAMATE RECEPTOR
HS21146MYOSIN VII, XV
HS21147RNA DEMETHYLASE ALKBH5
HS21148MITOCHONDRIAL DYNAMICS PROTEINS 49/51 FAMILY MEMBER
HS21149SMITH-MAGENIS SYNDROME REGION GENE 8 PROTEIN
HS21150ZGC:112980
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