About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS21001TETRATRICOPEPTIDE REPEAT PROTEIN 31
HS21002VACUOLAR ATP SYNTHASE SUBUNIT H
HS21003ADULT RETINA PROTEIN
HS21004
HS21005ADENOSINE/GUANOSINE DIPHOSPHATASE
HS21006MITOFERRIN-1-RELATED
HS21007HOMEOBOX PROTEIN NKX
HS21008ASPARTATE AMINOTRANSFERASE
HS21009METAL TRANSPORTER CNNM
HS21010DIHYDRODIPICOLINATE SYNTHASE
HS21011MORN REPEAT-CONTAINING PROTEIN 4
HS21012TRANSCRIPTION FACTOR MLR1/2
HS21013SLIT HOMOLOG
HS21014RHO GTPASE ACTIVATING PROTEIN 18,19-RELATED
HS21015CRUMBS FAMILY MEMBER
HS21016AGAP004733-PA
HS21017HEXOKINASE
HS21018TITIN
HS21019UNCHARACTERIZED
HS21020UNCHARACTERIZED
HS21021GLUTAMINE SYNTHETASE
HS21022B-BOX DOMAIN CONTAINING
HS21023BUTYROPHILIN
HS21024B-BOX DOMAIN CONTAINING
HS21025
HS21026
HS21027
HS21028ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
HS21029REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS2103050S RIBOSOMAL PROTEIN L21
HS21031UPF0669 PROTEIN C6ORF120
HS21032PROTEASE M1 ZINC METALLOPROTEASE
HS2103339S RIBOSOMAL PROTEIN L45, MITOCHONDRIAL
HS21034G-PROTEIN COUPLED RECEPTOR 158-RELATED
HS21035PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY SUBUNIT
HS21036KRUEPPEL-LIKE TRANSCRIPTION FACTOR
HS21037PERIAXIN/AHNAK
HS2103850S RIBOSOMAL PROTEIN L4
HS21039HYDROLETHALUS SYNDROME PROTEIN 1
HS21040COLLAGEN ALPHA
HS21041TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE
HS21042B-BOX DOMAIN CONTAINING
HS21043CELL DIVISION CONTROL PROTEIN 6-RELATED
HS21044UNCHARACTERIZED
HS21045ACTIN
HS21046
HS21047NUCLEAR PORE COMPLEX PROTEIN NUP133
HS21048TRANSCRIPTION INITIATION FACTOR TFIID
HS21049CALPAIN
HS21050LOW-TEMPERATURE VIABILITY PROTEIN LTV1-RELATED
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