About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS21301
HS21302NUCLEAR HORMONE RECEPTOR
HS21303VESICULAR-FUSION PROTEIN NSF
HS21304CYCLIN DEPENDANT KINASE-5 ACTIVATOR
HS21305FERRITIN
HS21306FERRITIN
HS21307FERRITIN
HS21308FERRITIN
HS21309
HS21310
HS21311DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A
HS21312
HS21313FERRITIN
HS21314FERRITIN
HS21315PROTEIN PHOSPHATASE
HS21316ABC TRANSPORTER G FAMILY MEMBER 28
HS21317POLYCYSTIN FAMILY MEMBER
HS21318RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN
HS21319GENERAL VESICULAR TRANSPORT FACTOR P115
HS21320CORONIN
HS21321PHOSPHOMANNOMUTASE
HS21322TRANSPOSABLE ELEMENT-RELATED
HS21323ACIDIC LEUCINE-RICH NUCLEAR PHOSPHOPROTEIN 32
HS21324
HS21325UNCHARACTERIZED
HS21326SPERM-ASSOCIATED ANTIGEN 5
HS21327FORKHEAD BOX PROTEIN
HS21328SH3 DOMAIN-CONTAINING
HS21329CENTLEIN
HS21330DISCONNECTED-RELATED
HS21331HEPATOMA-DERIVED GROWTH FACTOR-RELATED
HS21332SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 3
HS21333TETRATRICOPEPTIDE REPEAT PROTEIN 39 FAMILY MEMBER
HS21334AT29763P-RELATED
HS21335GROUP XII SECRETORY PHOSPHOLIPASE A2 FAMILY MEMBER
HS21336CASPASE
HS21337CALCIUM UNIPORTER PROTEIN, MITOCHONDRIAL
HS21338TRANSCRIPTION FACTOR 7 FAMILY MEMBER
HS21339-
HS21340CYTOCHROME P450 508A4-RELATED
HS21341SPHINGOMYELIN SYNTHETASE
HS21342BIFUNCTIONAL 3'-PHOSPHOADENOSINE 5'-PHOSPHOSULFATE SYNTHASE
HS21343DICKKOPF3-LIKE 3
HS21344TRNA-AMINOACYLATION COFACTOR ARC1 FAMILY MEMBER
HS21345SERINE/THREONINE-PROTEIN KINASE PLK
HS21346LIPOXYGENASE
HS21347PA14 DOMAIN-CONTAINING PROTEIN
HS21348UNCHARACTERIZED
HS21349NUCLEAR FACTOR-RELATED
HS21350NUCLEAR FUSION PROTEIN FUS2
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