About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS21401TRANSPOSABLE ELEMENT-RELATED
HS21402
HS21403SPARC OSTEONECTIN
HS21404
HS21405
HS21406APRATAXIN-RELATED
HS21407DNAJ-LIKE-2, ISOFORM A-RELATED
HS21408WD40 REPEAT PROTEIN
HS21409REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS21410HOMEOBOX PROTEIN UNC-4 HOMOLOG
HS21411CAPZ-INTERACTING PROTEIN AND RELATED PROTEINS
HS21412INTERCELLULAR ADHESION MOLECULE
HS21413
HS21414MARVEL-CONTAINING POTENTIAL LIPID RAFT-ASSOCIATED PROTEIN
HS21415TRANSMEMBRANE PROTEIN 246
HS21416TWO PORE CHANNEL 3
HS21417CASEIN KINASE-RELATED
HS21418CASEIN KINASE-RELATED
HS21419AAA-FAMILY ATPASE
HS21420
HS21421VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL
HS21422REST COREPRESSOR COREST PROTEIN-RELATED
HS21423
HS21424MAP/MICROTUBULE AFFINITY-REGULATING KINASE
HS21425GUANYLATE BINDING PROTEIN
HS21426MATRIN 3/NUCLEAR PROTEIN 220-RELATED
HS21427B-BOX DOMAIN CONTAINING
HS21428B-BOX DOMAIN CONTAINING
HS21429NACHT, LRR AND CARD DOMAINS-CONTAINING
HS21430
HS21431CRUMBS FAMILY MEMBER
HS21432UNCHARACTERIZED
HS21433APOPTOSIS-STIMULATING OF P53 PROTEIN
HS21434
HS21435SOWAH (DROSOPHILA) HOMOLOG
HS21436MICROSOMAL SIGNAL PEPTIDASE 23 KD SUBUNIT SPC22/23
HS21437SYNTAXIN
HS21438BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST
HS21439GUANYL-NUCLEOTIDE EXCHANGE FACTOR
HS21440CENTROSOMAL PROTEIN OF 44 KDA
HS21441DEOXYCYTIDYLATE DEAMINASE-RELATED
HS21442TENEURIN AND N-ACETYLGLUCOSAMINE-1-PHOSPHODIESTER ALPHA-N-ACETYLGLUCOSAMINIDASE
HS21443
HS21444TRANSPOSON TY3-I GAG-POL POLYPROTEIN
HS21445
HS21446EXPRESSED PROTEIN
HS21447
HS21448UNCHARACTERIZED
HS21449PROTEIN CBG26694
HS21450VASCULAR ENDOTHELIAL GROWTH FACTOR
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