About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_019918-T1UNCHARACTERIZED
LLU|FUN_019919-T1NUCLEOTIDE KINASE
LLU|FUN_019920-T1CYSTEINE PROTEASE ATG4
LLU|FUN_019921-T1CELL CYCLE CHECKPOINT PROTEIN RAD17
LLU|FUN_019922-T1AGAP008170-PA
LLU|FUN_019923-T1CELL CYCLE CHECKPOINT PROTEIN RAD17
LLU|FUN_019924-T1UBIQUITIN-CONJUGATING ENZYME E2
LLU|FUN_019925-T1
LLU|FUN_019926-T1FERREDOXIN/ADRENODOXIN
LLU|FUN_019927-T1GOLGIN- RELATED
LLU|FUN_019928-T1AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED
LLU|FUN_019929-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1
LLU|FUN_019930-T1NUCLEAR RECEPTOR COACTIVATOR 6
LLU|FUN_019931-T1PEROXISOMAL MEMBRANE PROTEIN PEX13
LLU|FUN_019932-T140S RIBOSOMAL PROTEIN S7
LLU|FUN_019933-T1RIBONUCLEASE H1
LLU|FUN_019934-T1ELONGIN-C
LLU|FUN_019935-T1NEURENSIN 1-RELATED
LLU|FUN_019936-T1
LLU|FUN_019937-T1PROTEIN STPG4
LLU|FUN_019938-T1RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN
LLU|FUN_019939-T1
LLU|FUN_019941-T1RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING
LLU|FUN_019942-T1
LLU|FUN_019943-T1DEK PROTEIN
LLU|FUN_019944-T1HISTONE DEACETYLASE HDAC1-RELATED
LLU|FUN_019945-T1KPL2-RELATED
LLU|FUN_019946-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 2D
LLU|FUN_019947-T1HOOK PROTEINS
LLU|FUN_019948-T1MICOS COMPLEX SUBUNIT MIC13
LLU|FUN_019949-T1
LLU|FUN_019950-T1
LLU|FUN_019951-T1
LLU|FUN_019952-T1FIBRINOGEN/TENASCIN/ANGIOPOEITIN
LLU|FUN_019953-T1OS10G0105400 PROTEIN
LLU|FUN_019954-T1KELCH REPEAT AND BTB DOMAIN-CONTAINING PROTEIN 13-RELATED
LLU|FUN_019955-T1MIX-TYPE HOMEOBOX GENE 1-RELATED
LLU|FUN_019956-T1N-ACETYLGLUCOSAMINYLTRANSFERASE VI
LLU|FUN_019957-T1
LLU|FUN_019958-T1N-ACETYLGLUCOSAMINYLTRANSFERASE VI
LLU|FUN_019959-T1
LLU|FUN_019960-T1MITOCHONDRIAL RIBOSOMAL PROTEIN S23
LLU|FUN_019961-T1KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG
LLU|FUN_019962-T1NICOLIN 1
LLU|FUN_019963-T1
LLU|FUN_019964-T1MIR DOMAIN-CONTAINING PROTEIN
LLU|FUN_019965-T1
LLU|FUN_019966-T1RYANODINE RECEPTOR AND IP3 RECEPTOR
LLU|FUN_019967-T1
LLU|FUN_019968-T1TUDOR DOMAIN CONTAINING PROTEIN
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