Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_019918-T1 | UNCHARACTERIZED |
LLU|FUN_019919-T1 | NUCLEOTIDE KINASE |
LLU|FUN_019920-T1 | CYSTEINE PROTEASE ATG4 |
LLU|FUN_019921-T1 | CELL CYCLE CHECKPOINT PROTEIN RAD17 |
LLU|FUN_019922-T1 | AGAP008170-PA |
LLU|FUN_019923-T1 | CELL CYCLE CHECKPOINT PROTEIN RAD17 |
LLU|FUN_019924-T1 | UBIQUITIN-CONJUGATING ENZYME E2 |
LLU|FUN_019925-T1 | |
LLU|FUN_019926-T1 | FERREDOXIN/ADRENODOXIN |
LLU|FUN_019927-T1 | GOLGIN- RELATED |
LLU|FUN_019928-T1 | AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED |
LLU|FUN_019929-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 |
LLU|FUN_019930-T1 | NUCLEAR RECEPTOR COACTIVATOR 6 |
LLU|FUN_019931-T1 | PEROXISOMAL MEMBRANE PROTEIN PEX13 |
LLU|FUN_019932-T1 | 40S RIBOSOMAL PROTEIN S7 |
LLU|FUN_019933-T1 | RIBONUCLEASE H1 |
LLU|FUN_019934-T1 | ELONGIN-C |
LLU|FUN_019935-T1 | NEURENSIN 1-RELATED |
LLU|FUN_019936-T1 | |
LLU|FUN_019937-T1 | PROTEIN STPG4 |
LLU|FUN_019938-T1 | RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN |
LLU|FUN_019939-T1 | |
LLU|FUN_019941-T1 | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING |
LLU|FUN_019942-T1 | |
LLU|FUN_019943-T1 | DEK PROTEIN |
LLU|FUN_019944-T1 | HISTONE DEACETYLASE HDAC1-RELATED |
LLU|FUN_019945-T1 | KPL2-RELATED |
LLU|FUN_019946-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2D |
LLU|FUN_019947-T1 | HOOK PROTEINS |
LLU|FUN_019948-T1 | MICOS COMPLEX SUBUNIT MIC13 |
LLU|FUN_019949-T1 | |
LLU|FUN_019950-T1 | |
LLU|FUN_019951-T1 | |
LLU|FUN_019952-T1 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
LLU|FUN_019953-T1 | OS10G0105400 PROTEIN |
LLU|FUN_019954-T1 | KELCH REPEAT AND BTB DOMAIN-CONTAINING PROTEIN 13-RELATED |
LLU|FUN_019955-T1 | MIX-TYPE HOMEOBOX GENE 1-RELATED |
LLU|FUN_019956-T1 | N-ACETYLGLUCOSAMINYLTRANSFERASE VI |
LLU|FUN_019957-T1 | |
LLU|FUN_019958-T1 | N-ACETYLGLUCOSAMINYLTRANSFERASE VI |
LLU|FUN_019959-T1 | |
LLU|FUN_019960-T1 | MITOCHONDRIAL RIBOSOMAL PROTEIN S23 |
LLU|FUN_019961-T1 | KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG |
LLU|FUN_019962-T1 | NICOLIN 1 |
LLU|FUN_019963-T1 | |
LLU|FUN_019964-T1 | MIR DOMAIN-CONTAINING PROTEIN |
LLU|FUN_019965-T1 | |
LLU|FUN_019966-T1 | RYANODINE RECEPTOR AND IP3 RECEPTOR |
LLU|FUN_019967-T1 | |
LLU|FUN_019968-T1 | TUDOR DOMAIN CONTAINING PROTEIN |