About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_45587-2.9
Bpl_scaf_45587-3.4RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING
Bpl_scaf_45587-3.6GATOR COMPLEX PROTEIN WDR59
Bpl_scaf_45587-4.2GTP-BINDING PROTEIN ALPHA SUBUNIT
Bpl_scaf_45587-4.3GTP-BINDING PROTEIN ALPHA SUBUNIT
Bpl_scaf_45587-5.14
Bpl_scaf_45587-5.2NUCLEAR RECEPTOR COACTIVATOR 5-RELATED
Bpl_scaf_45587-5.20RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN
Bpl_scaf_45587-5.21ACYLOXYACYL HYDROLASE
Bpl_scaf_45588-0.0G-PROTEIN COUPLED RECEPTOR
Bpl_scaf_45598-0.0BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
Bpl_scaf_45598-0.4
Bpl_scaf_45598-1.2
Bpl_scaf_45598-1.4PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_45598-3.0EPIMERASE-RELATED
Bpl_scaf_45598-3.1EPIMERASE-RELATED
Bpl_scaf_45598-3.2UNCHARACTERIZED
Bpl_scaf_45598-3.9
Bpl_scaf_45598-4.2BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
Bpl_scaf_45598-5.1
Bpl_scaf_45598-5.11
Bpl_scaf_45598-5.12
Bpl_scaf_45598-5.13UDP-D-XYLOSE:L-FUCOSE ALPHA-1,3-D-XYLOSYLTRANSFERASE-RELATED
Bpl_scaf_45598-5.16
Bpl_scaf_45598-5.19
Bpl_scaf_45612-0.10
Bpl_scaf_45621-0.2AUTOCRINE PROLIFERATION REPRESSOR PROTEIN A
Bpl_scaf_45628-0.6COLLAGEN ALPHA
Bpl_scaf_45628-0.7COLLAGEN ALPHA
Bpl_scaf_45628-0.8
Bpl_scaf_45628-0.9
Bpl_scaf_45632-0.3
Bpl_scaf_45632-0.8PURPLE ACID PHOSPHATASE
Bpl_scaf_4564-0.2HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
Bpl_scaf_45642-0.3
Bpl_scaf_45642-0.6
Bpl_scaf_45643-1.8TMEM26 PROTEIN
Bpl_scaf_45643-1.9POTE ANKYRIN DOMAIN
Bpl_scaf_45643-3.10BICOID-INTERACTING PROTEIN RELATED
Bpl_scaf_45643-3.11UNCHARACTERIZED
Bpl_scaf_45643-3.12
Bpl_scaf_45643-3.9HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Bpl_scaf_45643-4.15CYCLASE-LIKE PROTEIN 2
Bpl_scaf_45643-4.16
Bpl_scaf_45643-4.19
Bpl_scaf_45643-4.20STAR-RELATED LIPID TRANSFER PROTEIN 9
Bpl_scaf_45643-5.16ELYS PROTEIN
Bpl_scaf_45643-5.17TRANSMEMBRANE PROTEIN 180
Bpl_scaf_45643-5.6
Bpl_scaf_45643-5.8
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