About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_45200-2.7BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
Bpl_scaf_45207-0.0
Bpl_scaf_45209-0.2ALPHA-CATULIN
Bpl_scaf_45209-0.5ALPHA-CATULIN
Bpl_scaf_45209-1.10ER MEMBRANE PROTEIN COMPLEX
Bpl_scaf_45209-1.17DYNEIN LIGHT CHAIN ROADBLOCK
Bpl_scaf_45209-2.11
Bpl_scaf_45209-2.12NEPHRIN
Bpl_scaf_45209-2.13SIDESTEP PROTEIN
Bpl_scaf_45213-0.0UNCHARACTERIZED PROTEIN YFIH
Bpl_scaf_45213-0.1CEREBELLIN-RELATED
Bpl_scaf_45213-0.14MYOTROPHIN
Bpl_scaf_45213-0.7-
Bpl_scaf_45213-1.3WD40 REPEAT PROTEIN
Bpl_scaf_45213-1.639S RIBOSOMAL PROTEIN L10, MITOCHONDRIAL
Bpl_scaf_45213-2.5HYCCIN RELATED
Bpl_scaf_45214-0.5
Bpl_scaf_45214-0.7RALA BINDING PROTEIN 1 RALBP1
Bpl_scaf_45214-0.8SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C
Bpl_scaf_45214-1.7FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Bpl_scaf_45214-2.17
Bpl_scaf_45214-2.18THAP DOMAIN PROTEIN
Bpl_scaf_45214-2.22
Bpl_scaf_45214-2.6
Bpl_scaf_45214-3.12
Bpl_scaf_45214-3.14
Bpl_scaf_45214-3.17
Bpl_scaf_45214-3.8TATA-BOX BINDING PROTEIN
Bpl_scaf_45214-4.1
Bpl_scaf_45214-5.11RAS-RELATED PROTEIN RAB
Bpl_scaf_45214-6.6
Bpl_scaf_45214-6.7G PATCH DOMAIN CONTAINING PROTEIN
Bpl_scaf_45214-7.6APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
Bpl_scaf_45214-7.8DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
Bpl_scaf_45214-8.0
Bpl_scaf_45214-9.10
Bpl_scaf_45214-9.3TOLL-LIKE RECEPTOR
Bpl_scaf_45214-9.43
Bpl_scaf_45214-9.44
Bpl_scaf_45214-9.8
Bpl_scaf_45217-0.2OS10G0105400 PROTEIN
Bpl_scaf_45219-0.6BONUS, ISOFORM C-RELATED
Bpl_scaf_45219-1.0
Bpl_scaf_45219-1.1BONUS, ISOFORM C-RELATED
Bpl_scaf_45219-2.12NEUROTRANSMITTER GATED ION CHANNEL
Bpl_scaf_45219-2.6SIMILAR TO RIKEN CDNA E130308A19
Bpl_scaf_45227-0.4CRUMBS FAMILY MEMBER
Bpl_scaf_45229-0.2HOMEO BOX HB9 LIKE A-RELATED
Bpl_scaf_45229-0.3
Bpl_scaf_45229-1.18L-CYSTEINE DESULFHYDRASE
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