Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_45183-13.3 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_45183-14.3 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_45183-15.4 | SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED |
| Bpl_scaf_45183-16.6 | |
| Bpl_scaf_45183-16.7 | RECEPTOR FOR ACTIVATED PROTEIN KINASE C RACK1 |
| Bpl_scaf_45183-16.8 | RECEPTOR FOR ACTIVATED PROTEIN KINASE C RACK1 |
| Bpl_scaf_45183-17.1 | LD33804P |
| Bpl_scaf_45183-17.5 | NEURON-DERIVED NEUROTROPHIC FACTOR |
| Bpl_scaf_45183-2.29 | CELL DIVISION PROTEIN KINASE |
| Bpl_scaf_45183-2.30 | ATP-BINDING CASSETTE SUB-FAMILY C |
| Bpl_scaf_45183-2.31 | ATP-BINDING CASSETTE SUB-FAMILY C |
| Bpl_scaf_45183-2.6 | METHIONINE AMINOPEPTIDASE |
| Bpl_scaf_45183-3.6 | ARFAPTIN-RELATED |
| Bpl_scaf_45183-3.7 | ATP-BINDING CASSETTE SUB-FAMILY C |
| Bpl_scaf_45183-4.10 | ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 16 |
| Bpl_scaf_45183-4.11 | HEPATOCYTE GROWTH FACTOR-REGULATED TYROSINE KINASE SUBSTRATE |
| Bpl_scaf_45183-4.13 | FATTY ACID SYNTHASE |
| Bpl_scaf_45183-4.21 | |
| Bpl_scaf_45183-4.22 | FATTY ACID SYNTHASE |
| Bpl_scaf_45183-4.23 | FATTY ACID SYNTHASE |
| Bpl_scaf_45183-5.16 | |
| Bpl_scaf_45183-5.17 | |
| Bpl_scaf_45183-5.3 | |
| Bpl_scaf_45183-5.9 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| Bpl_scaf_45183-6.6 | PHD FINGER TRANSCRIPTION FACTOR |
| Bpl_scaf_45183-8.2 | UNCHARACTERIZED |
| Bpl_scaf_45183-8.4 | UNCHARACTERIZED |
| Bpl_scaf_45183-9.10 | RIBOSOMAL PROTEIN S7 |
| Bpl_scaf_45183-9.6 | IRE1-RELATED |
| Bpl_scaf_45184-0.1 | UPF0705 PROTEIN C11ORF49 |
| Bpl_scaf_45185-0.0 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_45185-1.10 | L1 TRANSPOSABLE ELEMENT-RELATED |
| Bpl_scaf_45185-1.12 | GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2 |
| Bpl_scaf_45185-1.13 | PX DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_45185-1.15 | |
| Bpl_scaf_45195-0.3 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_45195-1.13 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_45195-1.15 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_45195-1.18 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_45195-1.19 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_45195-1.2 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_45200-0.0 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
| Bpl_scaf_45200-1.10 | |
| Bpl_scaf_45200-1.6 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
| Bpl_scaf_45200-1.7 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
| Bpl_scaf_45200-2.0 | GAMMA-SECRETASE SUBUNIT PEN-2 |
| Bpl_scaf_45200-2.10 | CARBOXYLESTERASE |
| Bpl_scaf_45200-2.29 | DED DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_45200-2.30 | |
| Bpl_scaf_45200-2.31 |
