Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_4580-0.0 | |
| Bpl_scaf_4580-0.10 | ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_4580-0.9 | |
| Bpl_scaf_45807-0.10 | ATILLA, ISOFORM B-RELATED-RELATED |
| Bpl_scaf_45807-0.11 | SOLUTE CARRIER FAMILY 43 MEMBER 3-RELATED |
| Bpl_scaf_45815-0.16 | PEPTIDASE |
| Bpl_scaf_45815-0.23 | IG-LIKE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_45815-0.24 | CONTACTIN 5 |
| Bpl_scaf_45815-0.26 | |
| Bpl_scaf_45815-0.27 | IG-LIKE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_45827-0.11 | NADH-UBIQUINONE OXIDOREDUCTASE B14 SUBUNIT |
| Bpl_scaf_45827-0.6 | UNCHARACTERIZED |
| Bpl_scaf_45827-0.9 | |
| Bpl_scaf_45827-1.7 | FATTY ACID SYNTHASE |
| Bpl_scaf_45827-1.8 | RNA-BINDING PROTEIN LUC7-RELATED |
| Bpl_scaf_45838-0.2 | PROTEIN MCM10 HOMOLOG |
| Bpl_scaf_45838-1.11 | NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2 |
| Bpl_scaf_45838-1.20 | LAMINA-ASSOCIATED POLYPEPTIDE THYMOPOIETIN |
| Bpl_scaf_45838-1.9 | N-ACYLGLUCOSAMINE-2-EPIMERASE |
| Bpl_scaf_45844-0.18 | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING |
| Bpl_scaf_45844-0.20 | RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN |
| Bpl_scaf_45844-0.9 | DEK PROTEIN |
| Bpl_scaf_45844-1.26 | PROTEIN STPG4 |
| Bpl_scaf_45844-1.27 | 2-METHYLCITRATE DEHYDRATASE-RELATED |
| Bpl_scaf_45844-1.28 | PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1 |
| Bpl_scaf_45844-1.29 | GLYOXALASE FAMILY PROTEIN |
| Bpl_scaf_45844-1.30 | PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1 |
| Bpl_scaf_45844-1.7 | NEURENSIN 1-RELATED |
| Bpl_scaf_45845-0.0 | |
| Bpl_scaf_45850-0.1 | MICROSOMAL DIPEPTIDASE |
| Bpl_scaf_45850-1.13 | OXIDOREDUCTASE-RELATED |
| Bpl_scaf_45850-1.18 | |
| Bpl_scaf_45850-1.2 | UDP-D-XYLOSE:L-FUCOSE ALPHA-1,3-D-XYLOSYLTRANSFERASE-RELATED |
| Bpl_scaf_45856-0.0 | THREE PRIME REPAIR EXONUCLEASE 1, 2 |
| Bpl_scaf_45868-0.17 | SULFOTRANSFERASE SULT |
| Bpl_scaf_45868-0.18 | CDK-ACTIVATING KINASE ASSEMBLY FACTOR MAT1 |
| Bpl_scaf_45868-0.19 | TRNA METHYLTRANSFERASE |
| Bpl_scaf_45868-1.16 | GALECTIN |
| Bpl_scaf_45868-1.7 | POTASSIUM CHANNEL, SUBFAMILY K |
| Bpl_scaf_45868-1.8 | LEUCINE-RICH REPEAT-CONTAINING |
| Bpl_scaf_45878-0.15 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_45878-0.3 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_45878-0.5 | FORKHEAD BOX PROTEIN G1 |
| Bpl_scaf_45878-0.8 | ANKYRIN REPEAT-CONTAINING |
| Bpl_scaf_45878-1.10 | UNCHARACTERIZED |
| Bpl_scaf_45878-1.4 | |
| Bpl_scaf_45878-1.5 | F-BOX DOMAIN CONTAINING PROTEIN, EXPRESSED |
| Bpl_scaf_45888-0.10 | COLLAGEN ALPHA |
| Bpl_scaf_45888-0.21 | |
| Bpl_scaf_45888-0.22 | PROTEIN ARGININE N-METHYLTRANSFERASE |
