Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_44324-0.0 | |
| Bpl_scaf_44324-0.1 | |
| Bpl_scaf_44334-0.0 | |
| Bpl_scaf_44334-0.1 | |
| Bpl_scaf_44342-0.2 | L1 TRANSPOSABLE ELEMENT-RELATED |
| Bpl_scaf_44342-0.4 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST |
| Bpl_scaf_44342-0.8 | KINESIN-RELATED PROTEIN 6 |
| Bpl_scaf_44353-0.1 | NUCLEAR PORE COMPLEX PROTEIN NUP |
| Bpl_scaf_44353-0.14 | ENOLASE SUPERFAMILY, MANDELATE RACEMASE |
| Bpl_scaf_44353-0.19 | |
| Bpl_scaf_44361-0.14 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_44361-0.15 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_44361-0.8 | LITHOSTATHINE |
| Bpl_scaf_44362-1.11 | |
| Bpl_scaf_44362-1.8 | |
| Bpl_scaf_44362-2.22 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_44362-3.5 | JNK/SAPK-ASSOCIATED PROTEIN |
| Bpl_scaf_44362-3.6 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| Bpl_scaf_44362-4.1 | TRANSPOSABLE ELEMENT-RELATED |
| Bpl_scaf_44362-4.4 | VESICLE PROTEIN SORTING-ASSOCIATED |
| Bpl_scaf_44362-5.0 | |
| Bpl_scaf_44362-5.3 | |
| Bpl_scaf_44362-6.11 | |
| Bpl_scaf_44362-6.14 | TETRATRICOPEPTIDE REPEAT PROTEIN 16 |
| Bpl_scaf_44362-6.22 | |
| Bpl_scaf_44362-6.44 | TETRATRICOPEPTIDE REPEAT PROTEIN 16 |
| Bpl_scaf_44362-6.45 | TETRATRICOPEPTIDE REPEAT PROTEIN 16 |
| Bpl_scaf_44362-6.48 | FIBRINOGEN ALPHA CHAIN |
| Bpl_scaf_44362-6.49 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_44362-6.50 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_44362-6.7 | |
| Bpl_scaf_44363-0.1 | |
| Bpl_scaf_44363-0.4 | |
| Bpl_scaf_44371-0.2 | OS02G0815200 PROTEIN |
| Bpl_scaf_44371-0.21 | LD11652P |
| Bpl_scaf_44371-0.3 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G |
| Bpl_scaf_44371-0.6 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_44372-0.1 | 5-HYDROXYTRYPTAMINE RECEPTOR |
| Bpl_scaf_44372-1.6 | COLLAGEN ALPHA |
| Bpl_scaf_44372-2.0 | LEUCOKININ RECEPTOR-RELATED |
| Bpl_scaf_44372-3.10 | |
| Bpl_scaf_44372-3.9 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_44372-5.5 | ZGC:195170 |
| Bpl_scaf_44372-5.9 | HYALURONAN MEDIATED MOTILITY RECEPTOR |
| Bpl_scaf_44372-6.14 | |
| Bpl_scaf_44378-0.0 | |
| Bpl_scaf_44378-0.1 | |
| Bpl_scaf_44378-0.3 | |
| Bpl_scaf_44378-0.6 | |
| Bpl_scaf_44395-0.17 |
