Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_44477-0.0 | |
| Bpl_scaf_44477-0.1 | |
| Bpl_scaf_44484-0.0 | |
| Bpl_scaf_44486-0.11 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_44486-0.12 | |
| Bpl_scaf_44486-0.3 | |
| Bpl_scaf_44486-1.0 | |
| Bpl_scaf_44486-1.1 | |
| Bpl_scaf_44486-1.3 | |
| Bpl_scaf_44486-2.5 | |
| Bpl_scaf_44486-2.6 | |
| Bpl_scaf_44490-0.2 | TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE |
| Bpl_scaf_44490-1.10 | SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED |
| Bpl_scaf_44490-1.7 | SPHINGOMYELIN PHOSPHODIESTERASE |
| Bpl_scaf_44490-1.9 | PROTEIN PHOSPHATASE 2C |
| Bpl_scaf_44490-2.6 | SAM DOMAIN-CONTAINING PROTEIN-RELATED |
| Bpl_scaf_44492-0.0 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_44494-0.0 | |
| Bpl_scaf_44495-0.3 | BEN DOMAIN-CONTAINING PROTEIN 3 |
| Bpl_scaf_44495-0.4 | |
| Bpl_scaf_44502-0.4 | ABC TRANSPORTER G FAMILY MEMBER 28 |
| Bpl_scaf_44503-0.2 | |
| Bpl_scaf_44507-0.1 | PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED |
| Bpl_scaf_44507-0.4 | PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED |
| Bpl_scaf_44507-1.13 | |
| Bpl_scaf_44507-1.15 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_44507-1.6 | ASPARTYL PROTEASE DDI-RELATED |
| Bpl_scaf_44507-1.9 | |
| Bpl_scaf_44507-2.13 | CALPONIN |
| Bpl_scaf_44507-2.14 | DIMETHYLANILINE MONOOXYGENASE |
| Bpl_scaf_44507-2.16 | DIMETHYLANILINE MONOOXYGENASE |
| Bpl_scaf_44510-1.12 | |
| Bpl_scaf_44510-1.13 | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED |
| Bpl_scaf_44510-1.9 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
| Bpl_scaf_44510-2.11 | BCL7 RELATED |
| Bpl_scaf_44510-2.12 | PEPTIDYL-TRNA HYDROLASE 2 |
| Bpl_scaf_44510-2.13 | CELL DIVISION CYCLE 16,23,27 |
| Bpl_scaf_44510-2.14 | UNCHARACTERIZED |
| Bpl_scaf_44510-2.15 | FATTY ACID BINDING PROTEIN |
| Bpl_scaf_44510-2.9 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
| Bpl_scaf_44514-0.0 | |
| Bpl_scaf_44519-0.3 | FRIZZLED |
| Bpl_scaf_44519-0.5 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE |
| Bpl_scaf_44519-1.1 | ANKYRIN REPEAT FAMILY PROTEIN |
| Bpl_scaf_44519-1.3 | SYNAPTOTAGMIN |
| Bpl_scaf_44519-2.10 | RIKEN CDNA 1700001C19 GENE |
| Bpl_scaf_44519-2.12 | |
| Bpl_scaf_44519-2.15 | ARGININE OR CREATINE KINASE |
| Bpl_scaf_44519-2.16 | MSF1/PX19 RELATED |
| Bpl_scaf_44519-2.4 |
