About Lamellibrachia satsuma

Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia satsumaAnnelidatube wormsCold seep110 Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE)104711

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM3323900v1736MbScaffold2023BSQZ01Atmosphere and Ocean Research Institute, The University of TokyoPRJDB1419995.50%27,979

References
TitleJournalPubmed ID
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsumaDNA Research37358253

Gene Information

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Gene IDDescription
Lsat_s042.g0170.t1NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED
Lsat_s042.g0171.t1TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS
Lsat_s042.g0172.t1NADH-UBIQUINONE OXIDOREDUCTASE PDSW SUBUNIT
Lsat_s042.g0173.t160S RIBOSOMAL PROTEIN L3-RELATED
Lsat_s042.g0174.t1COILED-COIL DOMAIN-CONTAINING PROTEIN 40
Lsat_s042.g0175.t1
Lsat_s042.g0176.t1TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN
Lsat_s042.g0177.t1
Lsat_s042.g0178.t1GLOBIN-LIKE PROTEIN
Lsat_s042.g0179.t1
Lsat_s042.g0180.t1DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED
Lsat_s042.g0181.t1
Lsat_s042.g0182.t1AQUAPORIN TRANSPORTER
Lsat_s042.g0183.t1MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED
Lsat_s042.g0184.t1
Lsat_s042.g0185.t1
Lsat_s042.g0186.t1POLYCYSTIN FAMILY MEMBER
Lsat_s042.g0187.t1
Lsat_s042.g0188.t1POLYCYSTIN-1
Lsat_s042.g0189.t1POLYCYSTIN-1
Lsat_s042.g0190.t1
Lsat_s042.g0191.t1
Lsat_s042.g0192.t1UNCHARACTERIZED
Lsat_s042.g0193.t1LEUCINE ZIPPER PROTEIN 4-RELATED
Lsat_s042.g0194.t1LEUCINE ZIPPER PROTEIN 4-RELATED
Lsat_s042.g0195.t1LEUCINE ZIPPER PROTEIN 4-RELATED
Lsat_s042.g0196.t1
Lsat_s042.g0197.t1SYNAPTOTAGMIN
Lsat_s042.g0198.t1
Lsat_s042.g0199.t1-
Lsat_s042.g0200.t1
Lsat_s042.g0201.t1
Lsat_s042.g0202.t1
Lsat_s042.g0203.t1EXCISION REPAIR CROSS-COMPLEMENTING 1 ERCC1
Lsat_s042.g0204.t1
Lsat_s042.g0205.t1
Lsat_s042.g0206.t1
Lsat_s042.g0207.t1
Lsat_s042.g0208.t1METALLO PHOSPHOESTERASE RELATED
Lsat_s042.g0209.t1METAXIN RELATED
Lsat_s042.g0210.t1RETROTRANSPOSON
Lsat_s042.g0211.t1
Lsat_s042.g0212.t1PHD-TYPE DOMAIN-CONTAINING PROTEIN
Lsat_s042.g0213.t1BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED
Lsat_s042.g0214.t1
Lsat_s042.g0215.t1HISTONE ACETYLTRANSFERASE
Lsat_s042.g0216.t1DNA POLYMERASE TYPE-X FAMILY MEMBER
Lsat_s042.g0217.t1MASK PROTEIN
Lsat_s042.g0218.t1EUKARYOTIC TRANSLATION INITIATION FACTOR 4E-BINDING PROTEIN
Lsat_s042.g0219.t1DED DOMAIN-CONTAINING PROTEIN
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