Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
Gene ID | Description |
---|---|
Lsat_s042.g0020.t1 | ERLIN (ER LIPID RAFT ASSOCIATED PROTEIN) HOMOLOG |
Lsat_s042.g0021.t1 | |
Lsat_s042.g0022.t1 | |
Lsat_s042.g0023.t1 | UNCHARACTERIZED |
Lsat_s042.g0024.t1 | CCHC-TYPE DOMAIN-CONTAINING PROTEIN |
Lsat_s042.g0025.t1 | |
Lsat_s042.g0026.t1 | DIPHTHINE METHYLTRANSFERASE |
Lsat_s042.g0027.t1 | POLYCOMB GROUP PROTEIN |
Lsat_s042.g0028.t1 | METHYLTRANSFERASE-RELATED |
Lsat_s042.g0029.t1 | |
Lsat_s042.g0030.t1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
Lsat_s042.g0031.t1 | DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 7B |
Lsat_s042.g0032.t1 | PROTEIN PM1 |
Lsat_s042.g0033.t1 | TYROSINE-PROTEIN KINASE RECEPTOR |
Lsat_s042.g0034.t1 | |
Lsat_s042.g0035.t1 | (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME |
Lsat_s042.g0036.t1 | |
Lsat_s042.g0037.t1 | TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 13 |
Lsat_s042.g0038.t1 | TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 13 |
Lsat_s042.g0039.t1 | |
Lsat_s042.g0040.t1 | IQ DOMAIN-CONTAINING PROTEIN K |
Lsat_s042.g0041.t1 | |
Lsat_s042.g0042.t1 | - |
Lsat_s042.g0043.t1 | |
Lsat_s042.g0044.t1 | |
Lsat_s042.g0045.t1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
Lsat_s042.g0046.t1 | |
Lsat_s042.g0047.t1 | |
Lsat_s042.g0048.t1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
Lsat_s042.g0049.t1 | |
Lsat_s042.g0050.t1 | NUCLEOSOME-REMODELING FACTOR SUBUNIT BPTF |
Lsat_s042.g0051.t1 | |
Lsat_s042.g0052.t1 | |
Lsat_s042.g0053.t1 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
Lsat_s042.g0054.t1 | POLY ADP-RIBOSE GLYCOHYDROLASE |
Lsat_s042.g0055.t1 | POLY ADP-RIBOSE GLYCOHYDROLASE |
Lsat_s042.g0056.t1 | POLY ADP-RIBOSE GLYCOHYDROLASE |
Lsat_s042.g0057.t1 | |
Lsat_s042.g0058.t1 | POLY ADP-RIBOSE GLYCOHYDROLASE |
Lsat_s042.g0059.t1 | 40S RIBOSOMAL PROTEIN S24 |
Lsat_s042.g0060.t1 | SRCR DOMAIN-CONTAINING PROTEIN |
Lsat_s042.g0061.t1 | OXA1 |
Lsat_s042.g0062.t1 | CRUMBS FAMILY MEMBER |
Lsat_s042.g0063.t1 | |
Lsat_s042.g0064.t1 | PROTEIN CBG16428 |
Lsat_s042.g0065.t1 | SYNAPTOTAGMIN |
Lsat_s042.g0066.t1 | |
Lsat_s042.g0067.t1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 |
Lsat_s042.g0068.t1 | ZINC FINGER PROTEIN 598 |
Lsat_s042.g0069.t1 | DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE |