About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_41238-0.5
Bpl_scaf_41238-0.6MUCIN 4-RELATED
Bpl_scaf_4124-0.0ZINC FINGER AND SCAN DOMAIN-CONTAINING
Bpl_scaf_4125-0.3TUMOR NECROSIS FACTOR RECEPTOR
Bpl_scaf_4125-0.6COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
Bpl_scaf_4125-1.24TRYPTOPHAN 2,3-DIOXYGENASE
Bpl_scaf_4125-1.25
Bpl_scaf_4125-1.27
Bpl_scaf_4125-1.32
Bpl_scaf_41252-0.3VISUAL SYSTEM HOMEOBOX 2
Bpl_scaf_41263-0.26
Bpl_scaf_41263-0.4ANKYRIN REPEAT-CONTAINING
Bpl_scaf_41275-0.0
Bpl_scaf_41276-0.3PROTEIN TINCAR
Bpl_scaf_41276-0.6PROTEIN FOLDING REGULATOR
Bpl_scaf_41276-1.2
Bpl_scaf_41276-1.5SEC15
Bpl_scaf_41276-2.3PHOSPHOLIPID ACYLTRANSFERASE
Bpl_scaf_41276-3.0
Bpl_scaf_41276-3.4UNNAMED PRODUCT
Bpl_scaf_41276-4.17SPHINGOLIPID DELTA 4 DESATURASE/C-4 HYDROXYLASE PROTEIN DES2
Bpl_scaf_41276-4.18
Bpl_scaf_41276-4.19BADF TYPE ATPASE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_41276-4.21RAI16 PROTEIN-RELATED
Bpl_scaf_41276-4.33
Bpl_scaf_41276-4.47NITRIC OXIDE-ASSOCIATED PROTEIN 1
Bpl_scaf_41276-4.49DELTEX-RELATED
Bpl_scaf_41287-0.0
Bpl_scaf_41287-0.6
Bpl_scaf_41288-0.4
Bpl_scaf_41288-0.9HEXOKINASE
Bpl_scaf_41288-1.6ABRAXAS FAMILY MEMBER
Bpl_scaf_41288-1.7HEXOKINASE
Bpl_scaf_41288-2.3SOLUBLE LIVER ANTIGEN/LIVER PANCREAS ANTIGEN
Bpl_scaf_41288-2.4PROGRAMMED CELL DEATH 4
Bpl_scaf_41288-3.14SMALL NUCLEAR RIBONUCLEOPROTEIN
Bpl_scaf_41288-3.7TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED
Bpl_scaf_41288-3.8EQUILIBRATIVE NUCLEOSIDE TRANSPORTER
Bpl_scaf_41288-4.14JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN
Bpl_scaf_41288-4.15
Bpl_scaf_41288-4.19O-GLCNACASE
Bpl_scaf_41288-4.20
Bpl_scaf_41294-0.7TYROSINASE FAMILY MEMBER
Bpl_scaf_4130-0.13LD33804P
Bpl_scaf_4130-0.7ACTIN
Bpl_scaf_4130-1.10
Bpl_scaf_4130-1.15THIAMIN PYROPHOSPHOKINASE
Bpl_scaf_4130-1.16SWI/SNF-RELATED
Bpl_scaf_4130-1.28
Bpl_scaf_4130-1.29OS05G0565100 PROTEIN
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